| DPOGS210847 | ||
|---|---|---|
| Transcript | DPOGS210847-TA | 543 bp |
| Protein | DPOGS210847-PA | 180 aa |
| Genomic position | DPSCF300027 + 462684-463485 | |
| RNAseq coverage | 832x (Rank: top 15%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL012764 | 4e-87 | 86.19% | |
| Bombyx | BGIBMGA006975-TA | 1e-76 | 82.78% | |
| Drosophila | mRpL12-PA | 1e-39 | 62.75% | |
| EBI UniRef50 | UniRef50_E2AXN5 | 8e-46 | 56.83% | 39S ribosomal protein L12, mitochondrial n=2 Tax=Camponotus floridanus RepID=E2AXN5_CAMFO |
| NCBI RefSeq | NP_001040523.1 | 3e-75 | 82.78% | mitochondrial ribosomal protein L12 precursor [Bombyx mori] |
| NCBI nr blastp | gi|183979274 | 6e-85 | 85.00% | similar to CG5012-PA [Papilio xuthus] |
| NCBI nr blastx | gi|183979274 | 3e-82 | 85.00% | similar to CG5012-PA [Papilio xuthus] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005840 | 1e-26 | ribosome | |
| GO:0006412 | 1e-26 | translation | ||
| GO:0005622 | 1e-26 | intracellular | ||
| GO:0003735 | 1e-26 | structural constituent of ribosome | ||
| KEGG pathway | wpi:WPa_0555 | 4e-12 | ||
| K02935 (RP-L7, rplL) | maps-> | Ribosome | ||
| InterPro domain | [1-180] IPR015607 | 1.1e-65 | Ribosomal protein L12, mitochondrial | |
| [114-179] IPR013823 | 1e-26 | Ribosomal protein L7/L12, C-terminal | ||
| [108-179] IPR014719 | 6e-19 | Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like | ||
| [49-105] IPR008932 | 8.2e-12 | Ribosomal protein L7/L12, oligomerisation | ||
| Orthology group | MCL14840 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210847-TA
ATGAATAGTATCAGGATAGTAAGAAGGCTTCCTCTTTGCCAATGGAGATCATTCTCGAGATGCACAGTTTTGAACCAAGAAGTAGCAGAAGCTATAACCCCACTCACAGTACCTCCTCCTGAAGGAGTGGACAAACCAATTTCACCAAAAATTGAGAAAATTGTGTCAGAAATAACAAATCTAAATCTTCTTGAGGTGTCAGAACTTAGTCAAGTGTTAAAAAGAAGGTTAAACCTCCCTGATGCTCCTGTCATGCCAGTTGGCGGGTTTGCTATGGCGGCACCAGCAGCACAGGAAGAGGAGGAGGCGGCACCAAAGGCTGTCAAAACCAGCTACACTGTTAAAATGACAAAGTTTGATGACAAACAAAAGGTGGCACTAATCAAAGAAGTAAAGAGTCTCTTAGAAGGATATAACCTGGTTCAGGCCAAGAAGTTTGTTGAAAGCGTACCTACCGTTGTAAAAGCGGACATCTCTAAGGATGAAGCTGAAAAACTAAAAGAGGCATTGTCCAAAGTTGGAGCTGTCATAGAAATTGATTAA
>DPOGS210847-PA
MNSIRIVRRLPLCQWRSFSRCTVLNQEVAEAITPLTVPPPEGVDKPISPKIEKIVSEITNLNLLEVSELSQVLKRRLNLPDAPVMPVGGFAMAAPAAQEEEEAAPKAVKTSYTVKMTKFDDKQKVALIKEVKSLLEGYNLVQAKKFVESVPTVVKADISKDEAEKLKEALSKVGAVIEID-