DPOGS210873 | ||
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Transcript | DPOGS210873-TA | 654 bp |
Protein | DPOGS210873-PA | 217 aa |
Genomic position | DPSCF300027 + 1313095-1314478 | |
RNAseq coverage | 532x (Rank: top 24%) |
Annotation | ||||
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Heliconius | HMEL002439 | 2e-116 | 90.78% |   |
Bombyx | BGIBMGA006998-TA | 1e-91 | 78.90% |   |
Drosophila | CG32202-PA | 2e-11 | 34.92% |   |
EBI UniRef50 | UniRef50_E2AFR0 | 9e-43 | 45.63% | Non-histone protein 10 n=8 Tax=Endopterygota RepID=E2AFR0_CAMFO |
NCBI RefSeq | XP_001945537.1 | 2e-37 | 39.58% | PREDICTED: similar to predicted protein [Acyrthosiphon pisum] |
NCBI nr blastp | gi|322779037 | 5e-45 | 48.06% | hypothetical protein SINV_10681 [Solenopsis invicta] |
NCBI nr blastx | gi|322779037 | 2e-46 | 47.60% | hypothetical protein SINV_10681 [Solenopsis invicta] |
Group | ||||
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Gene Ontology | GO:0005515 | 4.6e-20 | protein binding | |
GO:0003677 | 3.5e-19 | DNA binding | ||
KEGG pathway | isc:IscW_ISCW017350 | 2e-09 |   | |
  | K10802 (HMGB1) | maps-> | Base excision repair | |
InterPro domain | [120-213] IPR009071 | 4.6e-20 | High mobility group, superfamily | |
[135-215] IPR000910 | 3.5e-19 | High mobility group, HMG1/HMG2 | ||
Orthology group | MCL15059 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210873-TA
ATGACAGTCCAACAACTGAACTCGAATATTTCTGACGACTCAGATGATATGGTTAGTTTACCATCGGAAGAAGAAATTTATAGACGAAAATATCAGTTGTTGCTGGAGCGATGTGAAGTGTTGCAGCAGGATAATGAACGAATTGTGAATAGGATACATGAAGTCAAGAAAATAACCAAACGATATAAAAAAGATATAAAATTGTTAGTCGAAAGACTAGATAAACATGGAGACCCCTTTAGAACGGCTTCAGTAGAAGTCGAGGTAAAACCAAAAGTTCCGGTACGACCTCCTCGTGTCGGTGCCAAGACACAGACCCAATCAAAACAGGTTGACAAACAAAATGCCAGTGGAGGAAAAAAACCAGCACCAAAAAGGAAAAGTAAAGCAGATAAGCCTGAAAGAGATCCAAACGCACCGAAGAAGCCATGCAATGCATTTTTCCAGTTTTGTCAGGAACAAAGGCCTGTAGTTGTTGCGGAAACTGCCACAGATGTAGGATCAGAGCCAACCAAACAAGAAATTACAAGACAACTTGCATCAAGGTGGAGGGCATTGACTAGTGACGAAAAACGGGTATATGTTGCAATGTTTGAAAGATCAAAGGAGAAGTATGCAGAAGAAATGTCAGCATACATCAAGAAAGAGCAGTAG
>DPOGS210873-PA
MTVQQLNSNISDDSDDMVSLPSEEEIYRRKYQLLLERCEVLQQDNERIVNRIHEVKKITKRYKKDIKLLVERLDKHGDPFRTASVEVEVKPKVPVRPPRVGAKTQTQSKQVDKQNASGGKKPAPKRKSKADKPERDPNAPKKPCNAFFQFCQEQRPVVVAETATDVGSEPTKQEITRQLASRWRALTSDEKRVYVAMFERSKEKYAEEMSAYIKKEQ-