DPOGS210917 | ||
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Transcript | DPOGS210917-TA | 816 bp |
Protein | DPOGS210917-PA | 271 aa |
Genomic position | DPSCF300045 + 69623-71134 | |
RNAseq coverage | 8951x (Rank: top 2%) |
Annotation | ||||
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Heliconius | HMEL015813 | 1e-121 | 79.34% |   |
Bombyx | BGIBMGA003066-TA | 3e-134 | 81.18% |   |
Drosophila | RFeSP-PA | 2e-38 | 65.08% |   |
EBI UniRef50 | UniRef50_Q1G0W2 | 8e-130 | 80.07% | Ubiquinol-cytochrome c reductase iron-sulfur subunit n=21 Tax=Pancrustacea RepID=Q1G0W2_BOMMO |
NCBI RefSeq | NP_001106738.1 | 1e-130 | 80.07% | ubiquinol-cytochrome c reductase [Bombyx mori] |
NCBI nr blastp | gi|164448652 | 3e-129 | 80.07% | ubiquinol-cytochrome c reductase [Bombyx mori] |
NCBI nr blastx | gi|315258472 | 6e-129 | 82.29% | ubiquinol-cytochrome c reductase [Spodoptera litura] |
Group | ||||
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Gene Ontology | GO:0016679 | 1.1e-128 | oxidoreductase activity, acting on diphenols and related substances as donors | |
GO:0055114 | 1.1e-128 | oxidation-reduction process | ||
GO:0008121 | 3.8e-54 | ubiquinol-cytochrome-c reductase activity | ||
GO:0051537 | 2.4e-44 | 2 iron, 2 sulfur cluster binding | ||
GO:0016491 | 2.4e-44 | oxidoreductase activity | ||
GO:0016020 | 3.1e-17 | membrane | ||
KEGG pathway | tca:661125 | 7e-91 |   | |
  | K00411 (RIP1, UQCRFS1, petA) | maps-> | Huntington's disease | |
  |   |   | Oxidative phosphorylation | |
  |   |   | Alzheimer's disease | |
  |   |   | Cardiac muscle contraction | |
  |   |   | Parkinson's disease | |
InterPro domain | [3-271] IPR014349 | 1.1e-128 | Rieske iron-sulphur protein | |
[112-271] IPR006317 | 3.8e-54 | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | ||
[133-271] IPR017941 | 2.4e-44 | Rieske [2Fe-2S] iron-sulphur domain | ||
[76-132] IPR004192 | 1.3e-25 | Ubiquinol cytochrome reductase, transmembrane domain | ||
[209-220] IPR005805 | 3.1e-17 | Rieske iron-sulphur protein, C-terminal | ||
Orthology group | MCL14361 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210917-TA
ATGACTTCTGTGGCTCGAGCGGGGCACTTAGCTCCATTTTTTAAGGCCTCTTGCTCTATCACTAATAATGGCCTGAAGCCCGTTGTAGCAATCGCAGCCCCAGCAGAAAAACTGGTCGTCCAACCTCTGCCAAAAACTTCGACTGTTCAGTCACTTCATGGGGCCCTGCCCGTACAGAGTTTGAAAGTAAGACACGGAAATTTCGCCCCAACTCAAGTACGTTTTGCGCATACTGATATCGCTTATCCCGACTTTTCCGCCTATCGTCGCAAGGAGAGCCAGGACCCAAAGGTTAAGGCCGATGACAGTGTCGATCGCCGCCAAGCCTTCACCTACCTTATTGCAGGAGCGGGATCTGTTGCGAGTGCCTATGCTGCCAAGTCTGTGGTCACACAGTTTGTGTCATCGATGGCGGCTGCCGCCGACGTCTTGGCTTTAGCTAAGATTGAAATTAAACTTGGTGATATTCCCGAAGGAAAGTCTGTTACCTTCAAATGGCGTGGAAAGCCACTGTTCATTCGTCACAGGACAGCAAACGAAATCTCAACCGAGAAGGCAGTCCCTGTAGACCAGCTTCGAGACCCCGAACATGATGATCAACGCACCCAAGACCCTAAATGGCTTGTGGTGATCGGTGTGTGCACCCACTTAGGTTGTGTGCCTGTTGCAAACGCTGGAGATTTTGGCGGTTACTACTGCCCTTGCCACGGTTCCCATTATGATGCTTCTGGCCGCATTCGCAAAGGCCCAGCACCTCTCAACCTTGAAGTACCCCCGCACACGTTTGTAGATGAAAGCCTCCTAGTTGTAGGATAA
>DPOGS210917-PA
MTSVARAGHLAPFFKASCSITNNGLKPVVAIAAPAEKLVVQPLPKTSTVQSLHGALPVQSLKVRHGNFAPTQVRFAHTDIAYPDFSAYRRKESQDPKVKADDSVDRRQAFTYLIAGAGSVASAYAAKSVVTQFVSSMAAAADVLALAKIEIKLGDIPEGKSVTFKWRGKPLFIRHRTANEISTEKAVPVDQLRDPEHDDQRTQDPKWLVVIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFVDESLLVVG-