| DPOGS210917 | ||
|---|---|---|
| Transcript | DPOGS210917-TA | 816 bp |
| Protein | DPOGS210917-PA | 271 aa |
| Genomic position | DPSCF300045 + 69623-71134 | |
| RNAseq coverage | 8951x (Rank: top 2%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL015813 | 1e-121 | 79.34% | |
| Bombyx | BGIBMGA003066-TA | 3e-134 | 81.18% | |
| Drosophila | RFeSP-PA | 2e-38 | 65.08% | |
| EBI UniRef50 | UniRef50_Q1G0W2 | 8e-130 | 80.07% | Ubiquinol-cytochrome c reductase iron-sulfur subunit n=21 Tax=Pancrustacea RepID=Q1G0W2_BOMMO |
| NCBI RefSeq | NP_001106738.1 | 1e-130 | 80.07% | ubiquinol-cytochrome c reductase [Bombyx mori] |
| NCBI nr blastp | gi|164448652 | 3e-129 | 80.07% | ubiquinol-cytochrome c reductase [Bombyx mori] |
| NCBI nr blastx | gi|315258472 | 6e-129 | 82.29% | ubiquinol-cytochrome c reductase [Spodoptera litura] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016679 | 1.1e-128 | oxidoreductase activity, acting on diphenols and related substances as donors | |
| GO:0055114 | 1.1e-128 | oxidation-reduction process | ||
| GO:0008121 | 3.8e-54 | ubiquinol-cytochrome-c reductase activity | ||
| GO:0051537 | 2.4e-44 | 2 iron, 2 sulfur cluster binding | ||
| GO:0016491 | 2.4e-44 | oxidoreductase activity | ||
| GO:0016020 | 3.1e-17 | membrane | ||
| KEGG pathway | tca:661125 | 7e-91 | ||
| K00411 (RIP1, UQCRFS1, petA) | maps-> | Huntington's disease | ||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Cardiac muscle contraction | ||||
| Parkinson's disease | ||||
| InterPro domain | [3-271] IPR014349 | 1.1e-128 | Rieske iron-sulphur protein | |
| [112-271] IPR006317 | 3.8e-54 | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | ||
| [133-271] IPR017941 | 2.4e-44 | Rieske [2Fe-2S] iron-sulphur domain | ||
| [76-132] IPR004192 | 1.3e-25 | Ubiquinol cytochrome reductase, transmembrane domain | ||
| [209-220] IPR005805 | 3.1e-17 | Rieske iron-sulphur protein, C-terminal | ||
| Orthology group | MCL14361 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210917-TA
ATGACTTCTGTGGCTCGAGCGGGGCACTTAGCTCCATTTTTTAAGGCCTCTTGCTCTATCACTAATAATGGCCTGAAGCCCGTTGTAGCAATCGCAGCCCCAGCAGAAAAACTGGTCGTCCAACCTCTGCCAAAAACTTCGACTGTTCAGTCACTTCATGGGGCCCTGCCCGTACAGAGTTTGAAAGTAAGACACGGAAATTTCGCCCCAACTCAAGTACGTTTTGCGCATACTGATATCGCTTATCCCGACTTTTCCGCCTATCGTCGCAAGGAGAGCCAGGACCCAAAGGTTAAGGCCGATGACAGTGTCGATCGCCGCCAAGCCTTCACCTACCTTATTGCAGGAGCGGGATCTGTTGCGAGTGCCTATGCTGCCAAGTCTGTGGTCACACAGTTTGTGTCATCGATGGCGGCTGCCGCCGACGTCTTGGCTTTAGCTAAGATTGAAATTAAACTTGGTGATATTCCCGAAGGAAAGTCTGTTACCTTCAAATGGCGTGGAAAGCCACTGTTCATTCGTCACAGGACAGCAAACGAAATCTCAACCGAGAAGGCAGTCCCTGTAGACCAGCTTCGAGACCCCGAACATGATGATCAACGCACCCAAGACCCTAAATGGCTTGTGGTGATCGGTGTGTGCACCCACTTAGGTTGTGTGCCTGTTGCAAACGCTGGAGATTTTGGCGGTTACTACTGCCCTTGCCACGGTTCCCATTATGATGCTTCTGGCCGCATTCGCAAAGGCCCAGCACCTCTCAACCTTGAAGTACCCCCGCACACGTTTGTAGATGAAAGCCTCCTAGTTGTAGGATAA
>DPOGS210917-PA
MTSVARAGHLAPFFKASCSITNNGLKPVVAIAAPAEKLVVQPLPKTSTVQSLHGALPVQSLKVRHGNFAPTQVRFAHTDIAYPDFSAYRRKESQDPKVKADDSVDRRQAFTYLIAGAGSVASAYAAKSVVTQFVSSMAAAADVLALAKIEIKLGDIPEGKSVTFKWRGKPLFIRHRTANEISTEKAVPVDQLRDPEHDDQRTQDPKWLVVIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFVDESLLVVG-