DPOGS210928 | ||
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Transcript | DPOGS210928-TA | 669 bp |
Protein | DPOGS210928-PA | 222 aa |
Genomic position | DPSCF300045 + 713021-718971 | |
RNAseq coverage | 7x (Rank: top 86%) |
Annotation | ||||
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Heliconius | HMEL013301 | 2e-98 | 89.64% |   |
Bombyx | BGIBMGA003079-TA | 2e-39 | 86.05% |   |
Drosophila | Sox21a-PA | 8e-43 | 95.18% |   |
EBI UniRef50 | UniRef50_D6WND1 | 5e-58 | 61.16% | Sox21a n=1 Tax=Tribolium castaneum RepID=D6WND1_TRICA |
NCBI RefSeq | XP_971910.1 | 9e-59 | 61.16% | PREDICTED: similar to Sox21a CG7345-PA [Tribolium castaneum] |
NCBI nr blastp | gi|91083763 | 2e-57 | 61.16% | PREDICTED: similar to Sox21a CG7345-PA [Tribolium castaneum] |
NCBI nr blastx | gi|110760893 | 2e-62 | 60.17% | PREDICTED: hypothetical protein LOC726150 [Apis mellifera] |
Group | ||||
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Gene Ontology | GO:0003677 | 3.9e-33 | DNA binding | |
GO:0005515 | 2.9e-27 | protein binding | ||
KEGG pathway |   | |||
InterPro domain | [9-88] IPR000910 | 3.9e-33 | High mobility group, HMG1/HMG2 | |
[2-83] IPR009071 | 2.9e-27 | High mobility group, superfamily | ||
Orthology group | MCL18472 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210928-TA
ATGTCTCTGTCGAAGCAACCTTCGGATCATATAAAGAGGCCCATGAACGCATTCATGGTGTGGTCCAGGGGTCAAAGGAGGAAGATGGCACAGGACAACCCGAAGATGCACAACTCAGAGATATCCAAGAGACTTGGAGCCGAGTGGAAGTTGCTCACTGAGATGGAGAAGAGACCGTTCATCGATGAGGCGAAAAGACTCAGAGCCCTCCACATGAAAGAACATCCCGATTATAAATATCGGCCGCGGCGGAAACCGAAGGCGTTGATCAAGAAGGAGCCCAAGTTCGGTTTCAACATCAGCGGTCTGATGGCACCAGTTCCCCGTCTGATGACGCCCTCTATGCCGCAACCAGTACCACAGATGCCTGTACCACATCACTTGCTGCAGGACAAACCTGACTTGGGACGGACGCTCTTCCCACCCATACCGTACCCATTTTACCCCTTCGCCAAGATTCCCTCCGACGATGGAAAGTTAGCCGCAGAATTAGCGCATCTACAGGCCCTGTACGGCGGCGCGCTGTACAGCTCGGCGTTGTACAACAGCGCCCTGTCTCCTTGCGGCTGCCCTCCTCGCCGGTCTCCGTCCCCCCCGCCGGACGTGAAGCGCCCGGTGGCTTACGTTCTGATGAAGAGTGACGAGGAGCCTCCGCAGCATGTTATATGA
>DPOGS210928-PA
MSLSKQPSDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKALIKKEPKFGFNISGLMAPVPRLMTPSMPQPVPQMPVPHHLLQDKPDLGRTLFPPIPYPFYPFAKIPSDDGKLAAELAHLQALYGGALYSSALYNSALSPCGCPPRRSPSPPPDVKRPVAYVLMKSDEEPPQHVI-