Monarch geneset OGS2.0

DPOGS210959
TranscriptDPOGS210959-TA675 bp
ProteinDPOGS210959-PA224 aa
Genomic positionDPSCF300004 - 827526-849146
RNAseq coverage356x (Rank: top 33%)
Annotation
HeliconiusHMEL0250333e-9495.98% 
BombyxBGIBMGA006388-TA9e-6097.73% 
Drosophilaabd-A-PB2e-6765.46% 
EBI UniRef50UniRef50_Q079618e-6872.88%Homeobox protein abdominal-A homolog n=535 Tax=root RepID=ABDA_TRICA
NCBI RefSeqNP_001166808.18e-9795.09%abdominal A isoform L [Bombyx mori]
NCBI nr blastpgi|2905634481e-9595.09%abdominal A isoform L [Bombyx mori]
NCBI nr blastxgi|2905634487e-12495.09%abdominal A isoform L [Bombyx mori]
Group
Gene OntologyGO:00036774e-25DNA binding
GO:00063554e-25regulation of transcription, DNA-dependent
GO:00055156.6e-24protein binding
GO:00435651.6e-23sequence-specific DNA binding
GO:00037001.6e-23sequence-specific DNA binding transcription factor activity
KEGG pathway 
InterPro domain[93-157] IPR0122874e-25Homeodomain-related
[73-160] IPR0090576.6e-24Homeodomain-like
[99-161] IPR0013561.6e-23Homeobox
[157-180] IPR0221321.2e-12Homeobox protein
[121-132] IPR0204792.8e-08Homeobox, eukaryotic
Orthology groupMCL15824 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS210959-TA
ATGGTGAACTACGCGCTGGGTCAGCATAACGGCGGAGCGGCGGTGTCCGCTGCCTCGGCGAGTATGGCCGCGGCGGCTCAATTCTACCACCAGGCTGCAGCCTCCGCGGCCTCCGCAGCCTCGGCCGCCTCCGTAGATGCCATGGGCGCCGCGTGCTCGCAGCCCTCCGCCCAGCCTCTCCCGGACATCCCGCGCTATCCCTGGATGTCCATCACCGATTTTCCATTTCCAGATTGGATGAGTCCCTTCGACCGCGTCGTCTGCGGTGAGTTCAATGGACCCAATGGTTGTCCACGGCGACGGGGCAGACAGACATACACCAGGTTTCAGACACTAGAACTAGAAAAGGAATTCCACTTCAACCACTACCTGACGCGTCGGCGTAGGATAGAGATCGCACACGCGCTCTGCCTCACAGAGAGACAGATTAAGATATGGTTCCAGAATCGACGTATGAAATTAAAGAAGGAATTGCGCGCCGTCAAGGAGATAAATGAGCAAGCCCGCAGGGAGAGAGAGGAACAGGACAGGATGAAGCAGCAGCAGCAAGAGAAGCAGGCGAAGCTGGAGAGCCAGCACCATGGCCACCACGTCACCCATCACCACGATCCCATGAAGATGCCTATAGACAAAGGCTCCAGCGACATCCTCAAAGTGAACAAAGTGCCGACGTAA

Protein sequence:

>DPOGS210959-PA
MVNYALGQHNGGAAVSAASASMAAAAQFYHQAAASAASAASAASVDAMGAACSQPSAQPLPDIPRYPWMSITDFPFPDWMSPFDRVVCGEFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARREREEQDRMKQQQQEKQAKLESQHHGHHVTHHHDPMKMPIDKGSSDILKVNKVPT-