MonarchBase - Protein-coding gene

DPOGS211027
Transcript	DPOGS211027-TA	2412 bp
Protein	DPOGS211027-PA	803 aa
Genomic position	DPSCF300004 + 1649491-1654506
RNAseq coverage	390x (Rank: top 31%)

Annotation
*Heliconius*	HMEL007146	6e-103	52.87%
*Bombyx*	BGIBMGA006506-TA	2e-155	77.67%
*Drosophila*	EloA-PA	1e-77	42.12%
EBI UniRef50	UniRef50_E1ZWV8	1e-88	44.90%	Transcription elongation factor B polypeptide 3 n=2 Tax=Formicidae RepID=E1ZWV8_CAMFO
NCBI RefSeq	XP_396851.3	2e-86	40.99%	PREDICTED: similar to Elongin A CG6755-PA, isoform A [Apis mellifera]
NCBI nr blastp	gi\|380012074	8e-89	43.67%	PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor B polypeptide 3-like [Apis florea]
NCBI nr blastx	gi\|350418466	2e-134	37.67%	PREDICTED: transcription elongation factor B polypeptide 3-like [Bombus impatiens]

Group
Gene Ontology	GO:0005634	5.8e-28	nucleus
	GO:0006355	5.8e-28	regulation of transcription, DNA-dependent
	GO:0016021	5.8e-28	integral to membrane
	GO:0003677	2.3e-16	DNA binding
	GO:0006351	2.3e-16	transcription, DNA-dependent
KEGG pathway
InterPro domain	[624-724] IPR010684	5.8e-28	RNA polymerase II transcription factor SIII, subunit A
	[1-93] IPR017923	2.3e-16	Transcription factor IIS, N-terminal
	[4-78] IPR003617	3.3e-07	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Orthology group	MCL15828		Insect specific

Nucleotide sequence:

>DPOGS211027-TA
ATGGCGTCTGTTTTAGATTTAGTTAAACATTACCAACGATCTATAGAAAAATATCCCAATGACGAACAGAAAATATTAAAGAGTATAGATAAGTTATACCACTTGAAAGTAACTGTACAGCATTTGCAAGATACTGGTGTTGGCCGCACAGTCAATGCTCTGCGAAAGGAACCAGGAGAAATTGGACAAGCTGCTAGAGCTCTTGTGTTAAAATGGAAGGTTATGGTGGCTGCGGAAGAAAGTGATCATGAAGATCATAATGACGACACCCAAAACTACAGTAGTCATGATAATGGCAGGGATTATGACAGTAACCCAAGCAAATCTACAAGTAAACATGATACATCTGAGAAATCAAATAGAAGATCAAAGACTGAAGAGAAGTACCATAAGCAAACAAATGGGGATTATAGTGGAAATAAGAGAAAATATCAAAGTAGTGAGGAGGAAGACCACGACAATACAAAAAAATCTAAATACTCACAAGATAACGGCTATAATATAAAATCAGAATCAAGAAAGAAAATAGAGTCATCCGAAAGTGAAAACAGTGAGGATGAATCATCACAAAGTGATAGTGGCAGTGAAGATACAAAGTCAGAAGATGAAGAAGAAGAGATCCCAGATACTGAAGCAAAGGTAGTGAAAAATCAACACAAAGAGTCATATAAACCATCCCATTTGAGACAGTCATCTAGTTCACATCAAAGCAAACATAAGCATGAATCAAGACATGATAGAGAAGATTCAAAGCAAAGCAAGGAACATAATGACAGTTCTGATAAAAGACATTCATCTGACAAACCCAAAGACAAGTCCCACAGTTCTCACTCCCACAAAAGTTCTAAAGGGCATGAAAAAAGTTTAGACAAAAAAGACAAAGAAAATAGACATTCAGACAAAGAGAAGCAAATAAAAGAAGACTCAAGTAAACACAGTACTAAACATAGATCTGGTAGCAGTTCAGATAAAACCAAGTCAAGCGGAACTGACAAACACAAGTCTAGTGAGAGTTCACACAAACATAAGTCCAGCAAGAGTGAAGATAAACACAGATCAAGTAGCAGTTCAGAGAAAAATAAAAAACTTGTACCCGAATATCATAAAAGTCACTCAGAGAGAACATCAAGTAGTACAGACAAACAATCCTCACAGATATCTGATAAACACAAAAAATCTTCTCATAAAGATGTTTCTAATGATAAACATAAATCTAAAGAACATGATGATAAAAAAGATGAACAAGTCAAAGAAAAGTCAAAAGAAAAACATAGTTCCTCAAAAGACAAAGAAAGTCACAAAAGTGAGAAGAAACATTCTTCTAAAGAATCAGGTGACAGCAAACGAAAATCTGATAGCAATCATAACAGCGATAGTTCCAAGAAAAGTAAACATAAGTCTAGTTCTAGTAAACAATCTAACAAGTCAAGGGAGGACAAGGAGAAACAACCAAAAAGAACAGAAGATAGCGATGATGGTATAGATTGTGGCTCAGGTGCCAGTTTTGCCGAAGCACTTGGCATGATAAGTCCGTCAAAGCCAAAGAAAAAATCTATATTTTCTAAAGATAATATGCAATCTCCACGCTCTCCTAGTGACAATCTCAACCCTCCTAATTTGCTAGCACCTAGTGCTAAATTGGCGCCATTGCCCTCTTTAGAAATATCTGCCTTACCAGAGATATCACCCAATTATCGGCCACGCCCACCTCCGAAATTCCTACCACACTTCAGCGATGAAGACGCTATGAGTAGCGCAATATCGTCGAAAAATCAGAGAACAAAAGTCTATTCTGGCAACAAAGTTATAGGAAAAATCACAACATTATATGAAATGTGTGTCCATGTCCTGCAAGAACATATTGATGCCCTTGAATACACTGGTGGGGTTCCATATGAAATATTAAAACCAGTTGTGGATAAAGCAACTCCACAGCAGTTATTTGTTTTGGAACATTACAACCCATACCTCATGGACGACACTGATCATTTGTGGCAGAAATTCTGTGAGAAAAGTTTTAGGAACAAGAAACGACAGGAAATGGAGACTTGGAGGGAAATGTATATTCGATGCCAAGAAGAACAAGAAATTAAGCTTAAATCACTCACTGCCAACATCAAAATGACTCAAGAGGCAAAGAAGGCGCCCATAAAGCAAACTAAAATGGCCTATGTTGATACTGTAGTGAAACCACCTCGTAATGTTGCAAAGAAACAGGCACAACACGGTACAGCATTTGCTGCTACTGCCAGCCCTGCTGCTAGGGTTGCCTCTCTTTCTGCAGCACCTAATGTATTAAAAGGTGGCAGGGCTGCCCCAGCCCCGGTTATAACAAACTCATCGAACTTCAAGCCCAAGAAAGCACCGCTTATGCAAAAAGCACTGCAATTTATGCGCGGAAGAAAACGATGA

Protein sequence:

>DPOGS211027-PA
MASVLDLVKHYQRSIEKYPNDEQKILKSIDKLYHLKVTVQHLQDTGVGRTVNALRKEPGEIGQAARALVLKWKVMVAAEESDHEDHNDDTQNYSSHDNGRDYDSNPSKSTSKHDTSEKSNRRSKTEEKYHKQTNGDYSGNKRKYQSSEEEDHDNTKKSKYSQDNGYNIKSESRKKIESSESENSEDESSQSDSGSEDTKSEDEEEEIPDTEAKVVKNQHKESYKPSHLRQSSSSHQSKHKHESRHDREDSKQSKEHNDSSDKRHSSDKPKDKSHSSHSHKSSKGHEKSLDKKDKENRHSDKEKQIKEDSSKHSTKHRSGSSSDKTKSSGTDKHKSSESSHKHKSSKSEDKHRSSSSSEKNKKLVPEYHKSHSERTSSSTDKQSSQISDKHKKSSHKDVSNDKHKSKEHDDKKDEQVKEKSKEKHSSSKDKESHKSEKKHSSKESGDSKRKSDSNHNSDSSKKSKHKSSSSKQSNKSREDKEKQPKRTEDSDDGIDCGSGASFAEALGMISPSKPKKKSIFSKDNMQSPRSPSDNLNPPNLLAPSAKLAPLPSLEISALPEISPNYRPRPPPKFLPHFSDEDAMSSAISSKNQRTKVYSGNKVIGKITTLYEMCVHVLQEHIDALEYTGGVPYEILKPVVDKATPQQLFVLEHYNPYLMDDTDHLWQKFCEKSFRNKKRQEMETWREMYIRCQEEQEIKLKSLTANIKMTQEAKKAPIKQTKMAYVDTVVKPPRNVAKKQAQHGTAFAATASPAARVASLSAAPNVLKGGRAAPAPVITNSSNFKPKKAPLMQKALQFMRGRKR-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: