| DPOGS211033 | ||
|---|---|---|
| Transcript | DPOGS211033-TA | 225 bp |
| Protein | DPOGS211033-PA | 74 aa |
| Genomic position | DPSCF300469 - 38370-40412 | |
| RNAseq coverage | 18x (Rank: top 80%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL003285 | 1e-28 | 93.22% | |
| Bombyx | BGIBMGA011308-TA | 5e-37 | 94.52% | |
| Drosophila | CG3902-PA | 3e-27 | 70.83% | |
| EBI UniRef50 | UniRef50_Q9DBL1 | 3e-24 | 71.43% | Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial n=29 Tax=root RepID=ACDSB_MOUSE |
| NCBI RefSeq | NP_001037672.1 | 2e-35 | 94.52% | acyl-coenzyme A dehydrogenase [Bombyx mori] |
| NCBI nr blastp | gi|112983006 | 4e-34 | 94.52% | acyl-coenzyme A dehydrogenase [Bombyx mori] |
| NCBI nr blastx | gi|112983006 | 1e-32 | 94.52% | acyl-coenzyme A dehydrogenase [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016627 | 1.8e-21 | oxidoreductase activity, acting on the CH-CH group of donors | |
| GO:0055114 | 1.8e-21 | oxidation-reduction process | ||
| KEGG pathway | dpo:Dpse_GA17761 | 3e-26 | ||
| K09478 (ACADSB) | maps-> | Fatty acid metabolism | ||
| Valine, leucine and isoleucine degradation | ||||
| InterPro domain | [3-71] IPR009075 | 1.8e-21 | Acyl-CoA dehydrogenase/oxidase C-terminal | |
| [5-67] IPR006090 | 4.4e-19 | Acyl-CoA oxidase/dehydrogenase, type 1 | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211033-TA
ATGGACTTCGTCAAAGAAGCCGCTATGGCAAAATACTTTGCTTCAGAAATCGCTCAAACCCTGACATCGAAATGCATAGACTTCATGGGAGGTGTCGGCTTCACTCGTGACTTTCCTCAGGAGAAGTTCTTCAGGGATGCAAAAATTGGAACAATCTATGAAGGCACCAGTAATATGCAGCTACAGACTATAGCCAAGCTCATTGAAAGACAGTACACACAATAA
>DPOGS211033-PA
MDFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFFRDAKIGTIYEGTSNMQLQTIAKLIERQYTQ-