| DPOGS211087 | ||
|---|---|---|
| Transcript | DPOGS211087-TA | 2292 bp |
| Protein | DPOGS211087-PA | 763 aa |
| Genomic position | DPSCF300007 - 1161943-1169860 | |
| RNAseq coverage | 2064x (Rank: top 6%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL012486 | 0.0 | 71.26% | |
| Bombyx | BGIBMGA002967-TA | 0.0 | 86.47% | |
| Drosophila | CG4389-PA | 0.0 | 73.22% | |
| EBI UniRef50 | UniRef50_F4X2P1 | 0.0 | 59.79% | Trifunctional enzyme subunit alpha, mitochondrial n=1 Tax=Acromyrmex echinatior RepID=F4X2P1_ACREC |
| NCBI RefSeq | NP_001040132.1 | 0.0 | 84.51% | hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] |
| NCBI nr blastp | gi|114052230 | 0.0 | 84.51% | hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] |
| NCBI nr blastx | gi|114052230 | 0.0 | 84.51% | hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016507 | 0 | fatty acid beta-oxidation multienzyme complex | |
| GO:0055114 | 0 | oxidation-reduction process | ||
| GO:0006635 | 0 | fatty acid beta-oxidation | ||
| GO:0003857 | 0 | 3-hydroxyacyl-CoA dehydrogenase activity | ||
| GO:0005739 | 0 | mitochondrion | ||
| GO:0004300 | 0 | enoyl-CoA hydratase activity | ||
| GO:0006631 | 1.3e-55 | fatty acid metabolic process | ||
| GO:0016491 | 1.3e-55 | oxidoreductase activity | ||
| GO:0005488 | 6.9e-54 | binding | ||
| GO:0008152 | 2e-45 | metabolic process | ||
| GO:0003824 | 2e-45 | catalytic activity | ||
| GO:0016616 | 4.2e-27 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ||
| GO:0050662 | 3.8e-23 | coenzyme binding | ||
| KEGG pathway | aga:AgaP_AGAP007784 | 0.0 | ||
| K07515 (HADHA) | maps-> | Fatty acid elongation in mitochondria | ||
| Biosynthesis of unsaturated fatty acids | ||||
| Benzoate degradation via CoA ligation | ||||
| Propanoate metabolism | ||||
| Limonene and pinene degradation | ||||
| Tryptophan metabolism | ||||
| Lysine degradation | ||||
| Valine, leucine and isoleucine degradation | ||||
| beta-Alanine metabolism | ||||
| Fatty acid metabolism | ||||
| Caprolactam degradation | ||||
| Butanoate metabolism | ||||
| InterPro domain | [31-762] IPR012803 | 0 | Fatty acid oxidation complex, alpha subunit, mitochondrial | |
| [363-541] IPR006176 | 1.3e-55 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | ||
| [352-545] IPR016040 | 6.9e-54 | NAD(P)-binding domain | ||
| [50-221] IPR001753 | 2e-45 | Crotonase, core | ||
| [543-644] IPR008927 | 4.2e-27 | 6-phosphogluconate dehydrogenase, C-terminal-like | ||
| [544-639] IPR006108 | 9.6e-27 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | ||
| [546-640] IPR013328 | 3.8e-23 | Dehydrogenase, multihelical | ||
| Orthology group | MCL12107 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211087-TA
ATGTCCAATAGTAAGATGTTTAATGCACTTAAAGTGCTTAGAAGGCACAACAATGGAAATTTCACAAATAGGTTACATAGCAGAACCTTGGCGGCTGCTGCAACGTCTCATGTCCACACCAAGTGCAAATTGGTTAATGGTGTATATGTCATAACACTTGATTCTCCAAATGTTAAGGTTAATTCCTTAAATCAAGACGTAATGGATGAAGTTAAATCAATCATTCAAGAAGTACAAAGTAATCCGGCAATCGAAGCTGCCGTTTTAATATCCGGCAAACCTGGGTGCTTTATAGCCGGTGCCGATATCAACATGATTGAACGCTGTAAAACAAAGGAAGAAGTAGTTGCGTTATCCAAAAATGGTCATGACATCTTTAGGAGCATAGAAAATTCTACAAAGCCTTATGTAGCAGCCATTCAAGGATCATGTCTCGGGGGCGGTCTGGAAACCGCATTGGCTTGTAAATACAGAATTGCTGTGAAAGATAACAAAACAGCTCTGGCACTTCCCGAAGTTATGCTAGGTTTATTGCCTGGAGGTGGCGGCACTGTTAGGATGCCCAGACTAACTTCAGTTCCTACGACTTTGGATCTTGCTCTGACTGGGAAAACTGTCAAGGCCGACAAAGCGAAGAAACTTGGGATGGTTGATTTGTTGGTATCTCCATTGGGGCCAGGCTTAGGACAACCCGAAGCTAACACAATGGCATATTTAGAAAAAGTCGCCGTTCAAATTGCCAAAGACATTGCATCCGGAAAAATGAAGGTAGAGAGGGGCAAGAAAGGTGTCGTCAATCAATTGATGGCCAGCGTCATGGATGTAGAGTTTGTCAAGAATTTCATCTTCAAGAAAGCCAAGGATCAAGTCATGAAAGCATCTCGTGGGTTATACCCAGCACCCCTCAAGATTCTTGAAGTCGTCAGGACTGGTGTAGATAAAGGTCAGGCTGCGGGCTACGAGGCGGAAGCCCAGGGCTTCGGTGAACTGGCCATGACGCCCCAGAGCAAAGGACTCATTGGACTCTTCAGAGGACAGACCGAGTGTAAGAAGAACAGGTTCGGCAAACCTCAGAATGAAGTTAAGACGATCGGCGTCCTAGGCGCGGGTCTGATGGGCGCTGGCATAGTTCAAGTGTCAGTGGACAAGGGTTACCAAGTAGTGTTAAAGGACGCCACTACAGCTGGCCTCTATCGCGGTATGGGTCAGATTCAAAATGGACTAGTCAACGCTGTCAAAAGGAAGAGGATCTCATCGTTGCAAAAGGACAAGTTTGTTTCGAACCTATTGCCGACGTTAGACTACAACAAGTTCAAAAACGCGGACTGCGTTATTGAAGCGGTGTTCGAAGACATCAATATCAAGCACAAAGTTATCAAGGAATTGGAAGCGGTTGTGCCCAAGCATTGTGTACTGGCCACGAATACTAGTGCCATACCCATAACCAAAATCGCAGCCGGCAGTAGCCGCCCTGAGAAAGTTATTGGCATGCACTATTTCTCCCCCGTGGACAAAATGCAGCTGTTAGAGATCATCCGTCATCCTGGGACGTCTGATGACACTGCTGCGGCGGCTGTTGCTGTTGGCCTCAAACAGGGCAAGGTTGTCATCACTGTCGGTGACGGACCGGGCTTCTACACGACAAGGATACTGTCCACCATGCTTAGCGAAGCCATTAGGCTGTTACAAGAGGGCGTTGATCCCAAGGATCTGGACAGCATGACAAAGCAGTTCGGCTTCCCCGTGGGCGCGGCCACACTCGCCGACGAGGTTGGCATTGACGTTGGAGCACACATCGCTGTCGACTTAGCCAAGGCGTTTGGTGACCGCATCAGCGGTGGGGATCTCAACATTATGCAAGACTTAGTCACAGCTGGCTTCATGGGCAGGAAGTCCGGCAAAGGTTTCTACGTTTATGAGAAAGGCACCAAGAACAGGGATGTCAACCAAGATGCTGTAAATATATTAAAGACTAAATACTCTCTGGAACCAAAAGGAGCAAATACTGTCGAAGACCAGCAGCTGAGGATGGTGTCCAGATTTGTCAATGAAGCAGTTTTATCACTCGAGGAGAAAATTTTACACAGTCCGCTTGAAGGTGACGTAGGCGCGGTCTTCGGTCTTGGATTTCCGCCATTCACTGGTGGACCATTCAGATGGGTAGACCAATTCGGTGCTGGAAAACTGGTAGCAAAAATGGAGGAATTCCAAGCTCTATATGGCGCTCCGTTCAAACCCGCACAGACCCTGGTTGACATGGCCAAAGATAGCAGCAAGAAATTCTATAACTAA
>DPOGS211087-PA
MSNSKMFNALKVLRRHNNGNFTNRLHSRTLAAAATSHVHTKCKLVNGVYVITLDSPNVKVNSLNQDVMDEVKSIIQEVQSNPAIEAAVLISGKPGCFIAGADINMIERCKTKEEVVALSKNGHDIFRSIENSTKPYVAAIQGSCLGGGLETALACKYRIAVKDNKTALALPEVMLGLLPGGGGTVRMPRLTSVPTTLDLALTGKTVKADKAKKLGMVDLLVSPLGPGLGQPEANTMAYLEKVAVQIAKDIASGKMKVERGKKGVVNQLMASVMDVEFVKNFIFKKAKDQVMKASRGLYPAPLKILEVVRTGVDKGQAAGYEAEAQGFGELAMTPQSKGLIGLFRGQTECKKNRFGKPQNEVKTIGVLGAGLMGAGIVQVSVDKGYQVVLKDATTAGLYRGMGQIQNGLVNAVKRKRISSLQKDKFVSNLLPTLDYNKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCVLATNTSAIPITKIAAGSSRPEKVIGMHYFSPVDKMQLLEIIRHPGTSDDTAAAAVAVGLKQGKVVITVGDGPGFYTTRILSTMLSEAIRLLQEGVDPKDLDSMTKQFGFPVGAATLADEVGIDVGAHIAVDLAKAFGDRISGGDLNIMQDLVTAGFMGRKSGKGFYVYEKGTKNRDVNQDAVNILKTKYSLEPKGANTVEDQQLRMVSRFVNEAVLSLEEKILHSPLEGDVGAVFGLGFPPFTGGPFRWVDQFGAGKLVAKMEEFQALYGAPFKPAQTLVDMAKDSSKKFYN-