DPOGS211128 | ||
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Transcript | DPOGS211128-TA | 567 bp |
Protein | DPOGS211128-PA | 188 aa |
Genomic position | DPSCF300007 - 342220-342918 | |
RNAseq coverage | 1547x (Rank: top 8%) |
Annotation | ||||
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Heliconius | HMEL017232 | 4e-58 | 96.69% |   |
Bombyx | BGIBMGA003004-TA | 2e-57 | 93.71% |   |
Drosophila | SmB-PA | 2e-58 | 72.68% |   |
EBI UniRef50 | UniRef50_P63162 | 4e-44 | 71.62% | Small nuclear ribonucleoprotein-associated protein N n=169 Tax=Eukaryota RepID=RSMN_HUMAN |
NCBI RefSeq | NP_001091757.1 | 5e-61 | 94.04% | small nuclear ribonucleoprotein polypeptide [Bombyx mori] |
NCBI nr blastp | gi|148298654 | 8e-60 | 94.04% | small nuclear ribonucleoprotein polypeptide [Bombyx mori] |
NCBI nr blastx | gi|148298654 | 5e-101 | 94.68% | small nuclear ribonucleoprotein polypeptide [Bombyx mori] |
Group | ||||
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KEGG pathway | ame:409356 | 4e-59 |   | |
  | K11086 (SNRPB, SMB) | maps-> | Spliceosome | |
  |   |   | Systemic lupus erythematosus | |
InterPro domain | [7-82] IPR006649 | 5.1e-26 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | |
[2-91] IPR010920 | 5.3e-26 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
[7-80] IPR001163 | 1.4e-21 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL13174 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211128-TA
ATGACGATCGGCAAGAATAATAAGATGCAACAGCACATAAACTATCGAGTCAGGGTAATATTGCAGGACTCGAGAACATTTATTGGAACATTTAAAGCTTTCGATAAACATATGAATTTAATATTGGGTGACTGTGAGGAGTTTAGAAAAATCAAGTCCAAAAATACCAAAACCGTTGATAGAGAAGAAAAGAGGACACTCGGTTTTGTTTTGCTAAGAGGTGAAAACATAGTGTCCCTCACTATAGAAGGACCTCCGCCTCCGGAAGAAGGCTTGCCTCGCGTCCCGCTGCCTGGTGCTATGGGAGGCCCAGGGGTTGGCAGAGCGGCTGGTCGAGGCGCGGGTATTGGCGGTGCTCCACCTGGTTTACAGGGCCCGGTAAGAGGTGTCGGAGGGCCTTCACAGCAGCATATGGCTCCGGGACCTAGGGGACAGTTATCGGCACCTCCACAGATGCGAGGCGGTCCAATGATGGGTGGTCCTCCGCCTGGTATGATGGGAGCACCTCCAGGAATGGGCCGAGGTGGCCCAGGCAGAGGTGGCCCACCTGGCATGCGTCGATACTAA
>DPOGS211128-PA
MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTVDREEKRTLGFVLLRGENIVSLTIEGPPPPEEGLPRVPLPGAMGGPGVGRAAGRGAGIGGAPPGLQGPVRGVGGPSQQHMAPGPRGQLSAPPQMRGGPMMGGPPPGMMGAPPGMGRGGPGRGGPPGMRRY-