DPOGS211165 | ||
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Transcript | DPOGS211165-TA | 2808 bp |
Protein | DPOGS211165-PA | 935 aa |
Genomic position | DPSCF300007 + 269287-274264 | |
RNAseq coverage | 1647x (Rank: top 8%) |
Annotation | ||||
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Heliconius | HMEL017217 | 0.0 | 82.86% |   |
Bombyx | BGIBMGA003151-TA | 0.0 | 80.07% |   |
Drosophila | Top1-PC | 0.0 | 63.54% |   |
EBI UniRef50 | UniRef50_P30189 | 0.0 | 63.54% | DNA topoisomerase 1 n=60 Tax=Bilateria RepID=TOP1_DROME |
NCBI RefSeq | XP_971195.2 | 0.0 | 61.25% | PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] |
NCBI nr blastp | gi|343175107 | 0.0 | 77.46% | topoisomerase 1B [Spodoptera exigua] |
NCBI nr blastx | gi|343175107 | 0.0 | 79.12% | topoisomerase 1B [Spodoptera exigua] |
Group | ||||
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Gene Ontology | GO:0003677 | 8.8e-266 | DNA binding | |
GO:0003917 | 8.8e-266 | DNA topoisomerase type I activity | ||
GO:0005694 | 8.8e-266 | chromosome | ||
GO:0006265 | 8.8e-266 | DNA topological change | ||
GO:0003918 | 8.1e-94 | DNA topoisomerase (ATP-hydrolyzing) activity | ||
KEGG pathway |   | |||
InterPro domain | [532-907] IPR013499 | 8.8e-266 | DNA topoisomerase I, C-terminal, eukaryotic-type | |
[373-602] IPR008336 | 7.2e-107 | DNA topoisomerase I, DNA binding, eukaryotic-type | ||
[603-935] IPR011010 | 1.3e-94 | DNA breaking-rejoining enzyme, catalytic core | ||
[604-836] IPR013500 | 8.1e-94 | DNA topoisomerase I, catalytic core, eukaryotic-type | ||
[758-933] IPR014727 | 4.6e-76 | DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type | ||
[491-603] IPR013030 | 2.7e-70 | DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type | ||
[604-751] IPR014711 | 8.1e-70 | DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type | ||
[532-541] IPR001631 | 8.1e-51 | DNA topoisomerase I, C-terminal | ||
[404-490] IPR013034 | 1.2e-32 | DNA topoisomerase I, domain 1 | ||
[812-882] IPR009054 | 1.2e-17 | DNA topoisomerases I, dispensable insert, eukaryotic-type | ||
Orthology group | MCL11290 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211165-TA
ATGAGTGTTGAAAATCCAGCCAGTGATGATGGTGATTCAGGAAAAGTAAATGGAAATAAAAGTGAACACGTGAACGGCATTCAAAACGGATACAGCAGCTCCGAGAAGCACAAAAGCAGCCACAAATCATCTAGTAAAGATAAACATCGCGACAAAGAACGTGACCACAAAAGCTCGAAACATAGCAGCAGTTCAAGCAGAGACAAAGATAAGGATCGTCATTCAAGCAATAAAAATCATAGCAGCTCCCACAAGTCATCCAGCAGAGATAAAGAACGGGATAGGGAACACAGAGACGACAAACATAAGGATAGAGAAAGATCTGATAGAGAGAGAAGTGATAAAGATAGGGACAGGCACAAGAGTGACAAAGACAGACATAGGGAGAGGAGTGAAAAAGATAAAGATAGAAGTGAAAAAGATAAACATAAATCCAGTAATGGTGAGAAGAAGTCTTCAAAGGAACATTCATCTTCATCTAGGGACAAAGATAAATCAAAGGATACAGATAAACACAGGGACCATGATAAAGACAGAAGTTACAAAGAAAAACATAGAAGCGATAAAGACAGACACTCCAGCTCAAAGGAGAAACACAGTTCTAGTAAAAGTAAGGAAAAAAGTAGTTCTGAAAAAAATGACAAAGTCAAATTGGAAGAGGAGTATCGGGATTCATCGATGAAACAGGAATACATGGAGGTTGACGAACCAACAGTAAAGAGGGAAATGAAATCTGAAAGCGATGATGGCTATGGGGGGGCTCTTAATACGACTGTATCATCATGTGACTATTCACTATCACAGTTCAAAGATGAACCTTTGTCGGAGATGCCCCTTGAGGAAGACAGTGCATCTGGCGGAGAGGAAGATGTACCACTGTTAGAGCGTAAGGCAATCAAAAAAAGAGCTATCAGTGAGAGTGAAGAAGACACACCACTGTTACAACGGAAGAAACAGAAAAAGAAAGTGAAGAAAGAAAATTATGATGACTACGATGATGAAGAATCGCAACAGAAAAAGAAGGCGAAGAAAACGAAATCCACAAAAAGCATCAAGACTGAAGCTGATGATGGCCCGAGCCCCACCAAACGGAAGAAAAAAGAAAATGAAGAACAGGAAGTCTGGAAATGGTGGGAAGAATCAAAAACGGACGATGGAACTAAGTGGCATTTTCTTGAACACAAAGGTCCCCTGTTTGCACCTCTATACGAACCGCTGCCAGAAAACGTTAAATTTCGTTATGACGGTAAAATAGTGCGGCTGTCGCAGGACAGCGAAGAAGTGGCCGGTTTCTACGCCCGTATGTTAGACCACGACTACACTACTAAGACTGTGTTCAATACCAACTTTTTCAATGATTGGCGCAAAGTCATGACAAATGAAGAAGCGAAATTAATTAAAGATCTCTCAAAATGTGACTTTAAAGAAATGCAAACATATTTCCAAAGTGTGTCAGAAAAGAATAAGAATCGCAGTAAAGAAGAGAAAGCAGCACTCAAAGCAAAGAATGAGGAAATCCAAAAGGAATATGGTTTTTGTACTATTGATGGACATAAAGAAAAAATTGGTAATTTTAGAATAGAGCCACCCGGCCTCTTTAGGGGTAGAGGTGAACATCCCAAGATGGGAATGTTGAAGAGGCGTGTGATGCCAGAAGACGTAATAATTAACTGTTCAAAAGACAGTAAGATACCAAAACCACCGGCTGGTCACAAATGGAAGGAAGTTAGACACGACAACACTGTAACATGGTTGGCATCATGGACAGAAAATGTTCAGCAGCAAGCCAAGTATGTCATGTTAAATCCCAGCTCCAAATTGAAGGGCGAAAAGGATTGGCAGAAATATGAAACGGCAAGAAATTTGCACAAATGTATCGATAAAATTAGAGAAACATATAAATCAGATTGGAAAGCTAAAGAGATGCGCGTCCGTCAACGTGCTGTGGCTTTGTATTTCATTGATAGACTGGCTTTAAGAGCAGGTAATGAGAAGGATGATGACCAAGCTGATACAGTCGGTTGTTGTTCCCTCCGCGTTGAGCACATTGAATTGCACAAAGAGAAAGATGGAAAGGAATTTGTGGTTGTGTTTGATTTCCTCGGTAAAGACTCTATTAGATATTACAATGAGGTGCCAGTAGAAAAACGTGTTTTTAAGAATCTCGAGATTTTCATGGAAAATAAAAAGGATAGTGATGATCTGTTTGACAGATTGAACACGCAGACTCTGAATGAACATTTAAAAGAATTGATGCCAGGGCTGACCGCTAAAGTTTTCCGTACCTACAACGCGTCCATAACGTTACAAAGACAACTGGAAGAGCTCACCGACCCCGATGCAACCATACCTGAGAAAATATTAGCTTATAACCGGGCAAATCGAGCCGTCGCCATACTTTGTAACCATCAGCGCGCGGTCCCCAAAGGTCATTCAAAGTCAATGGAAGCATTGAAAGAAAAAATTCAAGCTAAAAGAGACCAGGTTGATGAGGCCGAGGCTGATTATAGAGATGCAGCGAAGGCAGCTAAACGAGGCTCGGTAAAAGAAAAGTTAGCTTGTGACAAGAAGAAAAAAGCGCTAGAGCGGTTAAAGGAGCAGTTAAAGAAATTGGAGCTCCAAGAAACAGATCGTGATGAAAACAAAACAATAGCCCTCGGAACCTCCAAACTCAACTACCTTGATCCGAGGATCTCAGTGAGCTGGTGCAAGAAACACGGTGTACCAATTGAAAAAATATACAATAAAACGCAACGTGATAAATTCCGATGGGCTATTGACATGGCCGGGCCCGACTACATTTTCTAG
>DPOGS211165-PA
MSVENPASDDGDSGKVNGNKSEHVNGIQNGYSSSEKHKSSHKSSSKDKHRDKERDHKSSKHSSSSSRDKDKDRHSSNKNHSSSHKSSSRDKERDREHRDDKHKDRERSDRERSDKDRDRHKSDKDRHRERSEKDKDRSEKDKHKSSNGEKKSSKEHSSSSRDKDKSKDTDKHRDHDKDRSYKEKHRSDKDRHSSSKEKHSSSKSKEKSSSEKNDKVKLEEEYRDSSMKQEYMEVDEPTVKREMKSESDDGYGGALNTTVSSCDYSLSQFKDEPLSEMPLEEDSASGGEEDVPLLERKAIKKRAISESEEDTPLLQRKKQKKKVKKENYDDYDDEESQQKKKAKKTKSTKSIKTEADDGPSPTKRKKKENEEQEVWKWWEESKTDDGTKWHFLEHKGPLFAPLYEPLPENVKFRYDGKIVRLSQDSEEVAGFYARMLDHDYTTKTVFNTNFFNDWRKVMTNEEAKLIKDLSKCDFKEMQTYFQSVSEKNKNRSKEEKAALKAKNEEIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGMLKRRVMPEDVIINCSKDSKIPKPPAGHKWKEVRHDNTVTWLASWTENVQQQAKYVMLNPSSKLKGEKDWQKYETARNLHKCIDKIRETYKSDWKAKEMRVRQRAVALYFIDRLALRAGNEKDDDQADTVGCCSLRVEHIELHKEKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLEIFMENKKDSDDLFDRLNTQTLNEHLKELMPGLTAKVFRTYNASITLQRQLEELTDPDATIPEKILAYNRANRAVAILCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEADYRDAAKAAKRGSVKEKLACDKKKKALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISVSWCKKHGVPIEKIYNKTQRDKFRWAIDMAGPDYIF-