DPOGS211169 | ||
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Transcript | DPOGS211169-TA | 828 bp |
Protein | DPOGS211169-PA | 275 aa |
Genomic position | DPSCF300007 + 309874-311034 | |
RNAseq coverage | 111x (Rank: top 59%) |
Annotation | ||||
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Heliconius | HMEL017225 | 5e-61 | 47.15% |   |
Bombyx | BGIBMGA003155-TA | 9e-109 | 67.62% |   |
Drosophila | mRpL3-PA | 1e-77 | 58.70% |   |
EBI UniRef50 | UniRef50_E1ZX69 | 1e-78 | 59.60% | 39S ribosomal protein L3, mitochondrial n=6 Tax=Neoptera RepID=E1ZX69_CAMFO |
NCBI RefSeq | XP_001656360.1 | 2e-87 | 58.11% | Mitochondrial 39S ribosomal protein L3 [Aedes aegypti] |
NCBI nr blastp | gi|157134546 | 4e-86 | 58.11% | Mitochondrial 39S ribosomal protein L3 [Aedes aegypti] |
NCBI nr blastx | gi|157134546 | 9e-88 | 58.11% | Mitochondrial 39S ribosomal protein L3 [Aedes aegypti] |
Group | ||||
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Gene Ontology | GO:0005840 | 1.4e-21 | ribosome | |
GO:0006412 | 1.4e-21 | translation | ||
GO:0005622 | 1.4e-21 | intracellular | ||
GO:0003735 | 1.4e-21 | structural constituent of ribosome | ||
KEGG pathway | ppp:PHYPADRAFT_124350 | 2e-28 |   | |
  | K02906 (RP-L3, rplC) | maps-> | Ribosome | |
InterPro domain | [57-275] IPR009000 | 2e-49 | Translation elongation/initiation factor/Ribosomal, beta-barrel | |
[196-274] IPR000597 | 1.4e-21 | Ribosomal protein L3 | ||
Orthology group | MCL11974 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211169-TA
ATGGCATCATCTAACTTAAAACTCCTTTGCACATTATTAAGTAGGATTCGAGTCGAAAATGTGACAATAAAAAGGAATTTCTATCAACCACCGAAATATCGTCCACCGCATTGGTACATGCCAAAGGAGAGAGTGTTGACTGATGATATGGTCACTCAAGACAATAAGGATTTCATTGATGAAGTAAGACAAGATAAATTAAATTTGCAAGCTGCAATGGAATCACCCCTTAGTAAAATTGAATCCCAAGAAACCTTACAGTGGGACCCAACTACCAGAAGAGTTGGCTTAATAGCTCGTAAGATTGGAAATTACCCATTGTGGACAAAAACTGGAAAAAAAGTGCAGACCACTTTGCTTCAGGTGGTGGACAACCATGTCATAAAATACATACCCCCAGAAGAATACACACCTGCAAAAGATTTTAAGCTCAAAAAAGTTGGAAAATATAAATTAGGATGTATGTTAGTGGGATCAGAAACCATAGACCCTACTACAGTTACTAAGGATTATTGTGGCATTTTTACTAGTGTGGGAATGCTACCTAAAAGACATTTGTGTCGCTTCCATGTGTCACCAAGCGCACAACTGCCCACCGGCACACCTTTGTTTGCTACTCATTTTAGAGTTGGTGACTATTTAGATATAAGAGCCAAAACTATAGACCGAGGCTTCCAAGGAGTTATGAAGAGATGGGGATTTAAGGGCATGCCTGCTTCTCATGGAGTAACTAAAACTCATAGAAGACCAGGAAATATTGGAGCTGGTGGTGAAAAAGCTCGTGTATGGCCTGGAACTAAAATGCCAGGTCATATGGGCAACAGGTAA
>DPOGS211169-PA
MASSNLKLLCTLLSRIRVENVTIKRNFYQPPKYRPPHWYMPKERVLTDDMVTQDNKDFIDEVRQDKLNLQAAMESPLSKIESQETLQWDPTTRRVGLIARKIGNYPLWTKTGKKVQTTLLQVVDNHVIKYIPPEEYTPAKDFKLKKVGKYKLGCMLVGSETIDPTTVTKDYCGIFTSVGMLPKRHLCRFHVSPSAQLPTGTPLFATHFRVGDYLDIRAKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGAGGEKARVWPGTKMPGHMGNR-