Monarch geneset OGS2.0

DPOGS211169
TranscriptDPOGS211169-TA828 bp
ProteinDPOGS211169-PA275 aa
Genomic positionDPSCF300007 + 309874-311034
RNAseq coverage111x (Rank: top 59%)
Annotation
HeliconiusHMEL0172255e-6147.15% 
BombyxBGIBMGA003155-TA9e-10967.62% 
DrosophilamRpL3-PA1e-7758.70% 
EBI UniRef50UniRef50_E1ZX691e-7859.60%39S ribosomal protein L3, mitochondrial n=6 Tax=Neoptera RepID=E1ZX69_CAMFO
NCBI RefSeqXP_001656360.12e-8758.11%Mitochondrial 39S ribosomal protein L3 [Aedes aegypti]
NCBI nr blastpgi|1571345464e-8658.11%Mitochondrial 39S ribosomal protein L3 [Aedes aegypti]
NCBI nr blastxgi|1571345469e-8858.11%Mitochondrial 39S ribosomal protein L3 [Aedes aegypti]
Group
Gene OntologyGO:00058401.4e-21ribosome
GO:00064121.4e-21translation
GO:00056221.4e-21intracellular
GO:00037351.4e-21structural constituent of ribosome
KEGG pathwayppp:PHYPADRAFT_1243502e-28 
 K02906 (RP-L3, rplC)maps-> Ribosome
InterPro domain[57-275] IPR0090002e-49Translation elongation/initiation factor/Ribosomal, beta-barrel
[196-274] IPR0005971.4e-21Ribosomal protein L3
Orthology groupMCL11974 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS211169-TA
ATGGCATCATCTAACTTAAAACTCCTTTGCACATTATTAAGTAGGATTCGAGTCGAAAATGTGACAATAAAAAGGAATTTCTATCAACCACCGAAATATCGTCCACCGCATTGGTACATGCCAAAGGAGAGAGTGTTGACTGATGATATGGTCACTCAAGACAATAAGGATTTCATTGATGAAGTAAGACAAGATAAATTAAATTTGCAAGCTGCAATGGAATCACCCCTTAGTAAAATTGAATCCCAAGAAACCTTACAGTGGGACCCAACTACCAGAAGAGTTGGCTTAATAGCTCGTAAGATTGGAAATTACCCATTGTGGACAAAAACTGGAAAAAAAGTGCAGACCACTTTGCTTCAGGTGGTGGACAACCATGTCATAAAATACATACCCCCAGAAGAATACACACCTGCAAAAGATTTTAAGCTCAAAAAAGTTGGAAAATATAAATTAGGATGTATGTTAGTGGGATCAGAAACCATAGACCCTACTACAGTTACTAAGGATTATTGTGGCATTTTTACTAGTGTGGGAATGCTACCTAAAAGACATTTGTGTCGCTTCCATGTGTCACCAAGCGCACAACTGCCCACCGGCACACCTTTGTTTGCTACTCATTTTAGAGTTGGTGACTATTTAGATATAAGAGCCAAAACTATAGACCGAGGCTTCCAAGGAGTTATGAAGAGATGGGGATTTAAGGGCATGCCTGCTTCTCATGGAGTAACTAAAACTCATAGAAGACCAGGAAATATTGGAGCTGGTGGTGAAAAAGCTCGTGTATGGCCTGGAACTAAAATGCCAGGTCATATGGGCAACAGGTAA

Protein sequence:

>DPOGS211169-PA
MASSNLKLLCTLLSRIRVENVTIKRNFYQPPKYRPPHWYMPKERVLTDDMVTQDNKDFIDEVRQDKLNLQAAMESPLSKIESQETLQWDPTTRRVGLIARKIGNYPLWTKTGKKVQTTLLQVVDNHVIKYIPPEEYTPAKDFKLKKVGKYKLGCMLVGSETIDPTTVTKDYCGIFTSVGMLPKRHLCRFHVSPSAQLPTGTPLFATHFRVGDYLDIRAKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGAGGEKARVWPGTKMPGHMGNR-