| DPOGS211241 | ||
|---|---|---|
| Transcript | DPOGS211241-TA | 327 bp |
| Protein | DPOGS211241-PA | 108 aa |
| Genomic position | DPSCF300385 + 73937-74520 | |
| RNAseq coverage | 811x (Rank: top 16%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL005069 | 2e-55 | 91.67% | |
| Bombyx | BGIBMGA005169-TA | 3e-54 | 95.15% | |
| Drosophila | TfIIA-S-PA | 3e-50 | 86.67% | |
| EBI UniRef50 | UniRef50_Q7QA87 | 4e-49 | 88.46% | Transcription initiation factor IIA subunit 2 n=6 Tax=Pancrustacea RepID=Q7QA87_ANOGA |
| NCBI RefSeq | NP_001040463.1 | 2e-55 | 95.37% | transcription initiation factor IIA gamma chain [Bombyx mori] |
| NCBI nr blastp | gi|114052188 | 4e-54 | 95.37% | transcription initiation factor IIA gamma chain [Bombyx mori] |
| NCBI nr blastx | gi|114052188 | 2e-52 | 95.37% | transcription initiation factor IIA gamma chain [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005672 | 2.4e-78 | transcription factor TFIIA complex | |
| GO:0006367 | 2.4e-78 | transcription initiation from RNA polymerase II promoter | ||
| KEGG pathway | ame:550665 | 2e-50 | ||
| K03123 (TFIIA2) | maps-> | Basal transcription factors | ||
| InterPro domain | [1-103] IPR003194 | 2.4e-78 | Transcription initiation factor IIA, gamma subunit | |
| [54-106] IPR009088 | 5.5e-26 | Transcription factor IIA, beta-barrel | ||
| [1-53] IPR015872 | 1.7e-25 | Transcription initiation factor IIA, gamma subunit, N-terminal | ||
| [51-101] IPR015871 | 8.9e-25 | Transcription initiation factor IIA, gamma subunit, C-terminal | ||
| [3-53] IPR009083 | 2.8e-18 | Transcription factor IIA, helical | ||
| Orthology group | MCL11775 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211241-TA
ATGTCATATCAACTTTACAGGAATACTACAATTGGAAACACGTTACAGGAAAGCCTTGACGAATTGATACAGTATGGTCAAATAACACCTACGCTCGCTGTGAAAGTATTGTTACAGTTTGATAAATCTATTAACACAGCATTGTCTAACAGGGTGAAATCTAGATTAACCTTTAAAGCGGGGAAATTGAATACATACAGGTTTTGTGATAATGTTTGGACATTTATGTTGAATGATGTAGAATTCAGGGAGGTTCAAGAAGTTGCTAAGGTGGATAAAGTGAAAATAGTTGCCTGTGATGGAAAGAATGTGGAGGACCGTCGGTAA
>DPOGS211241-PA
MSYQLYRNTTIGNTLQESLDELIQYGQITPTLAVKVLLQFDKSINTALSNRVKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQEVAKVDKVKIVACDGKNVEDRR-