| DPOGS211258 | ||
|---|---|---|
| Transcript | DPOGS211258-TA | 606 bp |
| Protein | DPOGS211258-PA | 201 aa |
| Genomic position | DPSCF300425 + 33837-35628 | |
| RNAseq coverage | 395x (Rank: top 30%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL012693 | 2e-57 | 50.61% | |
| Bombyx | BGIBMGA005434-TA | 8e-38 | 69.16% | |
| Drosophila | RPA2-PA | 6e-20 | 29.10% | |
| EBI UniRef50 | UniRef50_Q5TLD2 | 3e-59 | 49.43% | Replication protein A middle subunit n=1 Tax=Bombyx mori RepID=Q5TLD2_BOMMO |
| NCBI RefSeq | NP_001036939.1 | 6e-60 | 49.43% | replication protein A2 [Bombyx mori] |
| NCBI nr blastp | gi|112983110 | 1e-58 | 49.43% | replication protein A2 [Bombyx mori] |
| NCBI nr blastx | gi|112983110 | 6e-56 | 49.43% | replication protein A2 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003676 | 1.6e-05 | nucleic acid binding | |
| KEGG pathway | dwi:Dwil_GK24313 | 1e-19 | ||
| K10739 (RFA2, RPA2) | maps-> | DNA replication | ||
| Homologous recombination | ||||
| Mismatch repair | ||||
| Nucleotide excision repair | ||||
| InterPro domain | [136-201] IPR011991 | 2.3e-18 | Winged helix-turn-helix transcription repressor DNA-binding | |
| [38-113] IPR012340 | 5.6e-17 | Nucleic acid-binding, OB-fold | ||
| [118-196] IPR014892 | 3.5e-13 | Replication protein A, C-terminal | ||
| [38-121] IPR016027 | 2e-10 | Nucleic acid-binding, OB-fold-like | ||
| Orthology group | MCL13543 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211258-TA
ATGTGGAATGATCAATCGAGAACTGATGGTGGATTCTTCAACAGTCAAAACGAATTTGGAAATGTAACTAACACTCCCAACCAAAGGCAAAAGTCTGCGAGACGTGCTTCACGCACTGCCCCAATTGTTATTAAACAGGCTTTAAATTGTGGGGACGAAGGAATTAAAATATGGGGCACAGAAATACAAATTGTGTCAATTGTTGCTCGTGTTCAAAATATTAGAGAACAAAGTACCAAAATCACATACACAATACAAGATATAACTGGTAGGATGAAAGCTGTTCTCTGGTTAGAACAAGAATCAATGGATGAAAATGATGTGGAACCTATTGGTAATAATTCTTCGATGATGGGTGGATTGCCGGCCAACTCGATGGTAGGAATGAATGATAACATGTCATTCAATGGATTGAATGTCCGTCAAGTGATGGTGTACAAACTGATATCATCGGCTGCATCAGACCAGGGTATAAGCAAGCAGGAATTGCTATCGAACTTGAGGGATCGTATGACTGAAGTTGAACTGGAGAATATTCTGGAATTCATGTGCAACGAAGGTCATACTTATTCAACTATTGATGAAGAGCACTTCAGGGCTACTTAA
>DPOGS211258-PA
MWNDQSRTDGGFFNSQNEFGNVTNTPNQRQKSARRASRTAPIVIKQALNCGDEGIKIWGTEIQIVSIVARVQNIREQSTKITYTIQDITGRMKAVLWLEQESMDENDVEPIGNNSSMMGGLPANSMVGMNDNMSFNGLNVRQVMVYKLISSAASDQGISKQELLSNLRDRMTEVELENILEFMCNEGHTYSTIDEEHFRAT-