Monarch geneset OGS2.0

DPOGS211287
TranscriptDPOGS211287-TA1773 bp
ProteinDPOGS211287-PA590 aa
Genomic positionDPSCF300161 + 298352-308919
RNAseq coverage288x (Rank: top 38%)
Annotation
HeliconiusHMEL0026570.091.01% 
BombyxBGIBMGA012504-TA0.062.77% 
DrosophilapHCl-PF0.065.78% 
EBI UniRef50UniRef50_B5DPB30.073.43%GA23558 n=13 Tax=Neoptera RepID=B5DPB3_DROPS
NCBI RefSeqXP_002030649.10.073.94%GM24460 [Drosophila sechellia]
NCBI nr blastpgi|1953278890.073.94%GM24460 [Drosophila sechellia]
NCBI nr blastxgi|1955905770.073.94%GD12531 [Drosophila simulans]
Group
Gene OntologyGO:00160214.7e-149integral to membrane
GO:00068114.7e-149ion transport
GO:00160201.1e-51membrane
GO:00068101.1e-51transport
GO:00052301.1e-51extracellular ligand-gated ion channel activity
KEGG pathway 
InterPro domain[6-590] IPR0156804.7e-149Glutamate-Gated Chloride Channel
[6-590] IPR0062014.7e-149Neurotransmitter-gated ion-channel
[294-308] IPR0062021.1e-51Neurotransmitter-gated ion-channel ligand-binding
[361-586] IPR0060294.8e-23Neurotransmitter-gated ion-channel transmembrane domain
[364-384] IPR0060287e-22Gamma-aminobutyric acid A receptor
Orthology groupMCL13330 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS211287-TA
ATGGGTTGGTCATGCGTTGTGGCACGCGCCGTGGCTTTCCTCTTTATGCTCAGCCGAGCGTCCGCGCTCACCTCCGACATCTTTGCGGCGGGCAAGTCGGACAAAGAGATTTTGGACAATCTGTTGAAAAATTCCCGCTACGACAAAAGACTGCTTCCACCAGTAGATGATCCTGATTTTTGTTGTGGTCTAACGTCACCCAACGACACTTTGAATAAAGATAATATTGGGCTACCCTCGCTTCGGCCTCGATCGCCCAATCGCGGTGTCCTCACCGTAAATGTTAGCGTGCTACTTCTTAGTTTAGCGTCTCCAGATGAATCTAGTCTTAAATACGAGGTTGAATTCCTCCTTCAGCAACAATGGTATGACCCGCGGCTCCGGTATTCGAATCAGTCCCATTACGACTATTTGAATGCCATCCACCATCACGAAGATATTTGGCTACCCGACACGTACTTCATTATGCACGGTGACTTCAAAGATCCGATAATTCCGATGCACTTTGCGTTGCGGATCTATCGCAACGGGACTATCAACTATCTGATGAGACGTCACCTCATACTGTCTTGTCAGGGACGGCTGAACATCTTCCCCTTCGACGACCCATTGTGTTCATTTGCCTTAGAGAGTATATCCTACGAGCAATCTGCCATAACGTACGTGTGGAAGAATGATGAAGACACGCTGCGGAAGTCGCCATCTTTGACGACCCTCAACGCTTACCTCATACAGAACCAGACCATACCTTGCCCCATAAAAGCCAGTTGGAGAGAATGTAAGAATTTATTAACGTCTTTGCAAGCAGCTGATGGTATTTCACTTTACGAGGACGATGAAGAGCTGACATGTAATCTTTGCCAGAGACGCTTTGAGGAGCAAGGTAACTACAGCTGTCTAAAGGTGGACCTTATTTTTACGAGAGACCGAGCATTCTACTTTACCACAGTTTTTATTCCTGGCATAATCCTGGTGACCTCTTCATTCATCACATTTTGGCTGGAATGGAACGCAGTTCCGGCTCGTTCCATGATAGGTAATTACAGCTGCCTCAAAGTGGATCTCATCTTCACGCGGGATAGATCATTTTACTTCACCACTGTTTTTATTCCGGGAATCATTTTGGTGACCTCATCATTTATTACTTTTTGGCTGGAATGGAATGCTGTGCCTGCTAGAGTCATGATCGGTGTAACTACAATGTTGAATTTCTTCACAACATCAAACGGTTTTCGGTCAACATTGCCGGTTGTATCGAATCTAACAGCTATGAACGTATGGGACGGCGTCTGCATGTGCTTCATATACGCGTCGCTTCTGGAATTCGTGTGCGTGAATTACGTCGGCAGGAAGCGTCCTTTGCATAACGTCGTGTACCGCCCGGGAGAGAACCCCGTCACTCAGCGACTACCCGCAGTTCTGAGCAGAATTGGCATTATACTGGCCAGCCCCTTGGAGGCGATGGCATTTCTCAACTGGTCTAAAACTGATACGTCTGAGCCGGACACTAGCGGCGCTGGTGATAAAAAGCGCGAGTCGAGTGGCGCGGCTGATATAGTTACGTGTACAACTTGCACCGCGCCAGGAGCTTGTACTCACACGGCCAACAACGGCGGCGTCTCCGAGCCATGTTTCGTCCAGGTCCGTAAAAAGGAGCCGCCTCACCCCATCAGAGTGGCCAAGACCATCGACGTCATAGCTCGAATCACTTTCCCGACCGCATACGCGGTATTTCTTATCTTCTTCTTCATTCACTACAAAGCCTTCTCTTAA

Protein sequence:

>DPOGS211287-PA
MGWSCVVARAVAFLFMLSRASALTSDIFAAGKSDKEILDNLLKNSRYDKRLLPPVDDPDFCCGLTSPNDTLNKDNIGLPSLRPRSPNRGVLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNQSHYDYLNAIHHHEDIWLPDTYFIMHGDFKDPIIPMHFALRIYRNGTINYLMRRHLILSCQGRLNIFPFDDPLCSFALESISYEQSAITYVWKNDEDTLRKSPSLTTLNAYLIQNQTIPCPIKASWRECKNLLTSLQAADGISLYEDDEELTCNLCQRRFEEQGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGNYSCLKVDLIFTRDRSFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGIILASPLEAMAFLNWSKTDTSEPDTSGAGDKKRESSGAADIVTCTTCTAPGACTHTANNGGVSEPCFVQVRKKEPPHPIRVAKTIDVIARITFPTAYAVFLIFFFIHYKAFS-