| DPOGS211471 | ||
|---|---|---|
| Transcript | DPOGS211471-TA | 579 bp |
| Protein | DPOGS211471-PA | 192 aa |
| Genomic position | DPSCF300113 - 294845-297295 | |
| RNAseq coverage | 121x (Rank: top 57%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010928 | 1e-22 | 91.23% | |
| Bombyx | BGIBMGA002746-TA | 6e-34 | 60.69% | |
| Drosophila | CG42342-PH | 1e-33 | 55.56% | |
| EBI UniRef50 | UniRef50_E0VQF7 | 8e-36 | 61.38% | Collagen alpha-1, putative n=20 Tax=Coelomata RepID=E0VQF7_PEDHC |
| NCBI RefSeq | XP_002428351.1 | 2e-36 | 61.38% | collagen alpha-1 precursor, putative [Pediculus humanus corporis] |
| NCBI nr blastp | gi|270001046 | 6e-36 | 90.80% | hypothetical protein TcasGA2_TC011335 [Tribolium castaneum] |
| NCBI nr blastx | gi|270001046 | 7e-45 | 70.40% | hypothetical protein TcasGA2_TC011335 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | dre:492459 | 6e-08 | ||
| K10066 (COLEC11) | maps-> | Phagosome | ||
| InterPro domain | [51-108] IPR008160 | 6.8e-09 | Collagen triple helix repeat | |
| Orthology group | MCL27587 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211471-TA
ATGACAAGTGTTCAAGCACTGAGAAGCCACATATTTCTTGCCGCCAAGCTCGGTGGTGATTGGTATGTGGTGGTAGGTGGTGGTCCCAAAGCGGTCACTCGCCGCGACCGACCCAGCTGTCCCGAGTGCTCCGTCCGCACTGGAGCGCAGGGCGAGCCGGGCAGCAAGGGTGAGCGAGGAGATCCTGGACTACCCGGAACAGATGGAATTCCAGGACAAGAGGGTCCGAAGGGTGACAAAGGCTATAAAGGAGAACCCGGACCAGGCGGAAAACGCGGCCGTAAGGGTGACAAAGGTGACCGTGGGGAGCAAGGAGTTCCGGGACTGGACGCACCCTGCCCGCTAGGACCAGACGGACTGCCACTGCCGGGATGCGGCTGGCGACCCTCGAAGGAAGTGGCGCGGGAGGAGCGGCTGGGAGGAGGAGGTGACGGGACGCGCTCGGAGGACGACGCGGAGGAAGAAGATGCGGAGCCAGAAGACGAGGGCGGTGACTATGAAGGGAGAGACGACCTCGAGCCGCCGAGAGACTACGACGACTACACAGACAACGCGCATCACGACTCGCACCGGGACTGA
>DPOGS211471-PA
MTSVQALRSHIFLAAKLGGDWYVVVGGGPKAVTRRDRPSCPECSVRTGAQGEPGSKGERGDPGLPGTDGIPGQEGPKGDKGYKGEPGPGGKRGRKGDKGDRGEQGVPGLDAPCPLGPDGLPLPGCGWRPSKEVAREERLGGGGDGTRSEDDAEEEDAEPEDEGGDYEGRDDLEPPRDYDDYTDNAHHDSHRD-