DPOGS211596 | ||
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Transcript | DPOGS211596-TA | 291 bp |
Protein | DPOGS211596-PA | 96 aa |
Genomic position | DPSCF300084 + 482799-483089 | |
RNAseq coverage | 333x (Rank: top 35%) |
Annotation | ||||
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Heliconius | HMEL008040 | 3e-49 | 97.92% |   |
Bombyx | BGIBMGA006245-TA | 1e-48 | 93.75% |   |
Drosophila | CG2021-PA | 3e-41 | 79.79% |   |
EBI UniRef50 | UniRef50_Q9W087 | 6e-39 | 79.79% | CG2021 n=34 Tax=Eukaryota RepID=Q9W087_DROME |
NCBI RefSeq | XP_002026194.1 | 6e-40 | 80.85% | GL16212 [Drosophila persimilis] |
NCBI nr blastp | gi|125976760 | 2e-38 | 80.85% | GA15189 [Drosophila pseudoobscura pseudoobscura] |
NCBI nr blastx | gi|125976760 | 2e-38 | 80.85% | GA15189 [Drosophila pseudoobscura pseudoobscura] |
Group | ||||
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KEGG pathway | dpe:Dper_GL16212 | 2e-39 |   | |
  | K12627 (LSM8) | maps-> | RNA degradation | |
  |   |   | Spliceosome | |
InterPro domain | [5-81] IPR010920 | 1.4e-18 | Like-Sm ribonucleoprotein (LSM)-related domain | |
[3-72] IPR006649 | 1.5e-17 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[5-70] IPR001163 | 6e-16 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL13630 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211596-TA
ATGGCTTCAGGTCTAGAAAATTATATTAATCAGACAGTGTCTGTGATAACTGCAGATGGAAGAAATTTTATAGGCACATTAAAAGGATTCGACCAAACTATAAACATTATATTGGATGAATCCCATGAAAGAGTGTTTTCGTCGTCTACAGGAGTAGCACAAGTTGTTCTCGGGCTTCACATTATACGTGGTGACAATATAGCGATCGTCGGACAAATAGACGAGTCTATAGATAGTAGATTAGATCTCGGGAACATCAAAGCTGAACCATTGGGACCAATAGTACATTAA
>DPOGS211596-PA
MASGLENYINQTVSVITADGRNFIGTLKGFDQTINIILDESHERVFSSSTGVAQVVLGLHIIRGDNIAIVGQIDESIDSRLDLGNIKAEPLGPIVH-