| DPOGS211609 | ||
|---|---|---|
| Transcript | DPOGS211609-TA | 402 bp |
| Protein | DPOGS211609-PA | 133 aa |
| Genomic position | DPSCF300232 - 1317-3369 | |
| RNAseq coverage | 4x (Rank: top 89%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL005832 | 1e-10 | 47.06% | |
| Bombyx | BGIBMGA011109-TA | 2e-13 | 59.02% | |
| Drosophila | CG5931-PA | 1e-17 | 80.00% | |
| EBI UniRef50 | UniRef50_B4ITW8 | 2e-15 | 80.00% | GE23129 n=1 Tax=Drosophila yakuba RepID=B4ITW8_DROYA |
| NCBI RefSeq | XP_001599298.1 | 5e-17 | 80.00% | PREDICTED: similar to ENSANGP00000009625 [Nasonia vitripennis] |
| NCBI nr blastp | gi|156540980 | 1e-15 | 80.00% | PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Nasonia vitripennis] |
| NCBI nr blastx | gi|156540980 | 2e-14 | 80.00% | PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Nasonia vitripennis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016021 | 1.7e-11 | integral to membrane | |
| KEGG pathway | nvi:100115700 | 2e-16 | ||
| K12854 (SNRNP200, BRR2) | maps-> | Spliceosome | ||
| InterPro domain | [64-128] IPR018499 | 1.7e-11 | Tetraspanin | |
| [91-117] IPR000301 | 5.7e-08 | Tetraspanin, subgroup | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211609-TA
ATGGAAGCCGAATCAAACGGTGAATATCTTAAAATGTATAACATCGGTTCAATTCAAGTGGGCAATTTCAGCAAGCGGCTGGCGGCTTACAACATGAAGGTGTCGGAGCTGACGGGTGACCACCAGCTCACCAGGGAACAGATAGACGACACGCAGCTCATAGTGTGCACGCCAGAGAAATGGGACATCCTCGGCGGCCTGGCCCTCATCGGTCTGGGAGTTGCGACACTGCTGCAGCTAACCGATGTGTTGGAGGTCGTCACGACCAACGTGAACGCCATCCCTATCACTGTCATAGTACTCGGAGCCCTTATATTCCTGATAGCGTTCCTGGGATGCTGTGGGGCGATACGGGAGAACAGATGTTTTCTTACTTTGGTAAATAATATTTTTTATATATGA
>DPOGS211609-PA
MEAESNGEYLKMYNIGSIQVGNFSKRLAAYNMKVSELTGDHQLTREQIDDTQLIVCTPEKWDILGGLALIGLGVATLLQLTDVLEVVTTNVNAIPITVIVLGALIFLIAFLGCCGAIRENRCFLTLVNNIFYI-