DPOGS211721 | ||
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Transcript | DPOGS211721-TA | 501 bp |
Protein | DPOGS211721-PA | 166 aa |
Genomic position | DPSCF300239 - 75578-76261 | |
RNAseq coverage | 116x (Rank: top 58%) |
Annotation | ||||
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Heliconius | HMEL017356 | 3e-75 | 94.29% |   |
Bombyx | BGIBMGA013918-TA | 3e-76 | 95.00% |   |
Drosophila | MED20-PA | 9e-49 | 61.81% |   |
EBI UniRef50 | UniRef50_P91641 | 9e-47 | 61.81% | Mediator of RNA polymerase II transcription subunit 20 n=13 Tax=Endopterygota RepID=MED20_DROME |
NCBI RefSeq | XP_001600958.1 | 6e-57 | 71.43% | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] |
NCBI nr blastp | gi|156543437 | 9e-56 | 71.43% | PREDICTED: mediator of RNA polymerase II transcription subunit 20-like [Nasonia vitripennis] |
NCBI nr blastx | gi|156543437 | 8e-54 | 71.43% | PREDICTED: mediator of RNA polymerase II transcription subunit 20-like [Nasonia vitripennis] |
Group | ||||
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Gene Ontology | GO:0006357 | 9.9e-31 | regulation of transcription from RNA polymerase II promoter | |
GO:0016592 | 9.9e-31 | mediator complex | ||
GO:0001104 | 9.9e-31 | RNA polymerase II transcription cofactor activity | ||
KEGG pathway |   | |||
InterPro domain | [1-141] IPR013921 | 9.9e-31 | Mediator complex, subunit Med20 | |
Orthology group | MCL15249 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211721-TA
ATGGGTGTAACGGTTTTACAGCAATATCCGGTTCCTGAAAATAAAACCGGTACCTATGTTATAGATTTACTGACAAAAAGAATTTTAGCTCTGGGTGCTACACAGGCAGGACAATTCCTAGTCGACTGTGAAAGTTACTTATCACATCCGACTATGGGTTCAACAAAGACAGTACATATTTTACATAATTCAGAACAACCAGCATCTGTATTTTCAATACTTGAGAGTGGTACAAAGAATATTCATGTAATTGCCGATGGACTATTTGATCTGCTCATGATGAAGCTTTCACAACATTACACATCCAAGAAACAAACCAAGATAGAAAGCAAAGGTCCCAAGTTTGAACTCGGAGATTTCTGCATTAAACTCGGCTCTGTTACAATGAATCAGAATTTTAAAGGCATACTTATAGAGGTAACTGAATCATTTAGAATTTTTTCCCTAATAGTACTGTCCATTTTTTCCCATAATAGTACTTTCCACTTGCCATATACATAG
>DPOGS211721-PA
MGVTVLQQYPVPENKTGTYVIDLLTKRILALGATQAGQFLVDCESYLSHPTMGSTKTVHILHNSEQPASVFSILESGTKNIHVIADGLFDLLMMKLSQHYTSKKQTKIESKGPKFELGDFCIKLGSVTMNQNFKGILIEVTESFRIFSLIVLSIFSHNSTFHLPYT-