| DPOGS211792 | ||
|---|---|---|
| Transcript | DPOGS211792-TA | 816 bp |
| Protein | DPOGS211792-PA | 271 aa |
| Genomic position | DPSCF300107 + 403198-404013 | |
| RNAseq coverage | 207x (Rank: top 46%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL007939 | 2e-82 | 57.14% | |
| Bombyx | BGIBMGA004019-TA | 5e-43 | 53.15% | |
| Drosophila | Irbp-PA | 3e-19 | 29.96% | |
| EBI UniRef50 | UniRef50_P23475 | 9e-28 | 32.97% | X-ray repair cross-complementing protein 6 n=74 Tax=Euteleostomi RepID=XRCC6_MOUSE |
| NCBI RefSeq | XP_002117640.1 | 7e-22 | 32.01% | hypothetical protein TRIADDRAFT_61626 [Trichoplax adhaerens] |
| NCBI nr blastp | gi|198637 | 3e-28 | 33.33% | p70 Ku lupus autoantigen, partial [Mus musculus] |
| NCBI nr blastx | gi|1469515 | 7e-29 | 33.33% | DNA repair enzyme [Mus musculus] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005488 | 1.7e-35 | binding | |
| GO:0003677 | 8.1e-18 | DNA binding | ||
| GO:0006303 | 8.1e-18 | double-strand break repair via nonhomologous end joining | ||
| GO:0004003 | 8.1e-18 | ATP-dependent DNA helicase activity | ||
| KEGG pathway | mmu:14375 | 2e-27 | ||
| K10884 (XRCC6, KU70, G22P1) | maps-> | Non-homologous end-joining | ||
| InterPro domain | [2-194] IPR016194 | 1.7e-35 | Spen Paralogue and Orthologue SPOC, C-terminal-like | |
| [2-101] IPR006164 | 8.1e-18 | DNA helicase, ATP-dependent, Ku type | ||
| [97-180] IPR005160 | 3.1e-14 | Ku70/Ku80 C-terminal arm | ||
| Orthology group | MCL17283 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211792-TA
ATGATGAAACTCCTTGGTTTCAAGCCAGCCAGTATCATTTGTAAGGAAAAGTGGTATTTTAAAATTGGACAATTTTTATATCCAAATGAAAGTATTATAGAAGGTTCCACAGTCGCTTTCAAAGCTTTACATGAAGCTTGCACTGTTATGAAAATGGTAGCACTTTGTATTTTGTGTACTAGAGTCAATTCTAGACCCGTAATAGTTGCGCTGAGTCCTTGTGTGAAACCTCTCAATCTTAACATTGATATTGGTTTTGACATTGTTAATATACCATTTGTTGAACATGTAAGGGAACTTAATGTCGAAGAGGATGTTATCGAAGATGAGAGTCTAGTTGTAGAAAGTGCACACAAAGAGCTGATGAAGGGTATAATAAATAATACTATAATAGATTACCGACCCGATATGTTTGAGGATCCCAAATTGCAATCTAAATACAGAGCGATTGAGGCTCTAGCATTGGACGAAGATGAGACTGAACCTTTTGTAGATACAACCAAACCTAGCATTGAAAGATTTCAAAACTTACCAGACGATCTATTTGAGGAACTATTTGGACCCTTTGCATCTATGACTTTGAAGAGATCATGTCCTAAAGTGCCATCTCAACAGAACAAGAAGCCAAAAATTGAAAATTTTGATGAAGAACTTTTTAATACTAAATTGAAAGAAAAAAAGATTGAGTCATATACTGTGCCACAGTTAAAAAACATATTAAAATATAAAAATATTCAGAATCTTCCAGCGTTAAATGGCTTAAAAAAGGCTGAGCTTGTTAATTTAGTTTACACACATTGTGATGAAGAGAAATAA
>DPOGS211792-PA
MMKLLGFKPASIICKEKWYFKIGQFLYPNESIIEGSTVAFKALHEACTVMKMVALCILCTRVNSRPVIVALSPCVKPLNLNIDIGFDIVNIPFVEHVRELNVEEDVIEDESLVVESAHKELMKGIINNTIIDYRPDMFEDPKLQSKYRAIEALALDEDETEPFVDTTKPSIERFQNLPDDLFEELFGPFASMTLKRSCPKVPSQQNKKPKIENFDEELFNTKLKEKKIESYTVPQLKNILKYKNIQNLPALNGLKKAELVNLVYTHCDEEK-