Monarch geneset OGS2.0

DPOGS211882
TranscriptDPOGS211882-TA1644 bp
ProteinDPOGS211882-PA547 aa
Genomic positionDPSCF300011 - 790047-798481
RNAseq coverage9x (Rank: top 85%)
Annotation
HeliconiusHMEL0051682e-14985.67% 
BombyxBGIBMGA007598-TA6e-17192.51% 
DrosophilaLcch3-PC0.071.76% 
EBI UniRef50UniRef50_Q088320.071.76%Gamma-aminobutyric acid receptor subunit beta-like n=32 Tax=Coelomata RepID=GBRB3_DROME
NCBI RefSeqNP_001103251.10.073.55%ligand-gated chloride channel homolog 3 [Tribolium castaneum]
NCBI nr blastpgi|3064484450.086.80%ligand-gated chloride channel-like3 protein [Bombyx mori]
NCBI nr blastxgi|3064484450.086.80%ligand-gated chloride channel-like3 protein [Bombyx mori]
Group
Gene OntologyGO:00160218.2e-261integral to membrane
GO:00068118.2e-261ion transport
GO:00160201.8e-56membrane
GO:00068101.8e-56transport
GO:00052301.8e-56extracellular ligand-gated ion channel activity
GO:00052161.2e-13ion channel activity
GO:00048901.2e-13GABA-A receptor activity
KEGG pathway 
InterPro domain[73-545] IPR0062018.2e-261Neurotransmitter-gated ion-channel
[108-314] IPR0062021.8e-56Neurotransmitter-gated ion-channel ligand-binding
[314-546] IPR0060297.1e-49Neurotransmitter-gated ion-channel transmembrane domain
[317-337] IPR0060281.7e-42Gamma-aminobutyric acid A receptor
[169-183] IPR0022891.2e-13Gamma-aminobutyric-acid A receptor, beta subunit
Orthology groupMCL10694 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS211882-TA
ATGAAGCGGCAGTGTGATGACCGCGAGGGTGTCACCCGCGCCTCCACACCGCCTGCAGCAGCTCTTCCCGGTTCTTATGATCATGCTGGCGCTCTTAATTTCTTTGGCTCCAGCACGAGCTTCGTCTCCCTAAATGGTAATTCTATCCGAGCCTACGTTATTAAGATACCTCTAGATGAGAGATTCCAATCTTTAAAAACATCTGATTACTCAAAATACTTGTCATGTTTTATCTTCCAAGACATCGATAGGATTCATGTAGGTAATATTCAAAGATGTTCGTCTGTGAGAGCTGATCGTTCGGAGGCTGTGGACCGTCTCCAGAACGTCACGCAGACGGTGTCACGCATCCTCGACGGATATGACATACGTCTGAGACCAAATTTCGGAGGGGAGCCCCTCTATGTTGGAATGGACCTCACCATAGCTAGCTTCGACGCTATCTCAGAAGTAAATATGGATTACACAATCACCCTGTATCTAAATCAGTATTGGAAGGATGAAAGATTAGGTTTCGGGATGCAGGACGAGGTTCTCACTTTGTCGGGAGACTTCGCTGATAAGATATGGGTTCCGGATACTTTCTTCGCGAATGATAAAAATAGTTTTCTCCACGACGTGACGGAACGCAACAAGCTGGTGAGACTGGGCGGTGACGGTGGCGTGACATACGGCATGAGGTTCACGGCGACCCTGGCCTGCATGATGGACCTTCATTACTACCCCCTGGATAGTCAGAACTGCACCGTCGAGATCGAAAGCTATGGATACACAGTCTCCGATGTGGTGATGTACTGGAAGGATACGCCAGTCCGTGGAGTCGAGGATGCAGAGCTGCCACAATTCTCTATATTAGGACATGAAACTAACGACCGAAAGGAGAAGTTGGCGACAGGCGTCTATCAGAGACTGTCTTTGAGCTTCAAGTTGCGTCGGAATATAGGTTATTTTGTGTTTCAAACCTATTTGCCCAGTATTTTGATTGTGATGCTGTCCTGGGTCTCGTTTTGGATCAATCATGAAGCTACTTCGGCCAGAGTTGCTTTGGGTATAACAACCGTTCTAACAATGACTACGATCAGCACGGGCGTCCGCAGCAGTCTTCCTCGTATCTCCTACGTGAAAGCTATAGACATCTACCTGGTGATGTGTTTCGTATTCGTATTCGCCGCCTTGTTGGAGTACGCAGCCGTCAACTACACGTACTGGGGAGCGCGGGCCAGGAAACGGGCCAAGTTAAAGAACAGAGAGGTCCCCACCAGCACCAGCGTCGATAAGGATTTGAGAAGCGGTCCTCGGTCCCCTGAGGAGATCATAGCTCTCCGTGAGTGTCCCGGGGGCCGCGCGTCCCCCCTGCCGGGGCTGCGATCACGACCTCTAGCACCTTCCGGAGCACCACCCTCTCTCCGCATACAGCGGGACCACAACCTTCGGTACAGGACGCGGACCCACTCCCGGAACTATACCAATGGATCCAACAAGCCGAAGATGATACACGCGTTGAAGAAGGGCGCCACGGTCATCAAGGCTTCTATGCCGAAGATACGTGACGTGAACGTCATAGACACGTACTCCAGAGTAATATTTCCGATATGTTTCCTCATCTTCAACTCAGTGTACTGGGTGTTTTATATATTTGACTAA

Protein sequence:

>DPOGS211882-PA
MKRQCDDREGVTRASTPPAAALPGSYDHAGALNFFGSSTSFVSLNGNSIRAYVIKIPLDERFQSLKTSDYSKYLSCFIFQDIDRIHVGNIQRCSSVRADRSEAVDRLQNVTQTVSRILDGYDIRLRPNFGGEPLYVGMDLTIASFDAISEVNMDYTITLYLNQYWKDERLGFGMQDEVLTLSGDFADKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGGVTYGMRFTATLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKDTPVRGVEDAELPQFSILGHETNDRKEKLATGVYQRLSLSFKLRRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARARKRAKLKNREVPTSTSVDKDLRSGPRSPEEIIALRECPGGRASPLPGLRSRPLAPSGAPPSLRIQRDHNLRYRTRTHSRNYTNGSNKPKMIHALKKGATVIKASMPKIRDVNVIDTYSRVIFPICFLIFNSVYWVFYIFD-