| DPOGS211917 | ||
|---|---|---|
| Transcript | DPOGS211917-TA | 747 bp |
| Protein | DPOGS211917-PA | 248 aa |
| Genomic position | DPSCF300011 + 120939-122638 | |
| RNAseq coverage | 1843x (Rank: top 7%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017712 | 1e-76 | 68.65% | |
| Bombyx | BGIBMGA001060-TA | 8e-88 | 67.34% | |
| Drosophila | Clc-PC | 1e-26 | 38.17% | |
| EBI UniRef50 | UniRef50_B0XF42 | 2e-29 | 40.22% | Clathrin light chain n=10 Tax=Endopterygota RepID=B0XF42_CULQU |
| NCBI RefSeq | XP_001944260.1 | 2e-44 | 45.59% | PREDICTED: similar to clathrin light chain [Acyrthosiphon pisum] |
| NCBI nr blastp | gi|328725616 | 2e-43 | 46.74% | PREDICTED: clathrin light chain-like [Acyrthosiphon pisum] |
| NCBI nr blastx | gi|328725616 | 8e-45 | 45.38% | PREDICTED: clathrin light chain-like [Acyrthosiphon pisum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006886 | 1.6e-39 | intracellular protein transport | |
| GO:0030132 | 1.6e-39 | clathrin coat of coated pit | ||
| GO:0030130 | 1.6e-39 | clathrin coat of trans-Golgi network vesicle | ||
| GO:0005198 | 1.6e-39 | structural molecule activity | ||
| GO:0016192 | 1.6e-39 | vesicle-mediated transport | ||
| KEGG pathway | rno:83800 | 8e-23 | ||
| K04644 (CLTA, LCA) | maps-> | Huntington's disease | ||
| Endocytosis | ||||
| Lysosome | ||||
| Bacterial invasion of epithelial cells | ||||
| InterPro domain | [2-249] IPR000996 | 1.6e-39 | Clathrin light chain | |
| Orthology group | MCL12627 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211917-TA
ATGGATGATTTTGGAGACAACTTTGTACAAACTGAAGTAGATCCAGCAGCAGAATTCTTAGCTCGGGAACAAAACCAGCTAGCAGGCCTCGAAGATGAACTGGAAACCGGTGCTCCGCCCCCACTTGCTGTCTCATCGGGCAGCAATGGACTTGACGATTTCGTTGAAATACCAAGTTCTGCAGTATTTGAAGCTAATGACTTGATGGATGAAGAGCCATCCGCACCTGCCGTGGCTCCTGTGACACCAGTGTTCCGTCAGGAAAGAGAAGAACCAGAAAAGATAAAATTGTGGAGGGAAGAACAGAAAAAAAGGTTGGAGGAAAAAGATGCCGAGGAAGAAGAAAAGAAGCAGGAAATGTTAAAAGTAGCTAAAAAAGAGCTGGAGGATTGGTATAAAACTCACGAAGAACAAATATCTAAGACCAAAGCAGCTAACAGGCATCACGTTGAGACTGTACTAATAAAAAATTTCCTTTTCAATGCTGGCAGGGAGTCCGCTAATTCAACTGATACATGTGTGACTGTGATATTAAACAACATTTGTCCAAACAGAAATGCCGAGAAGGCTTTGGCAAGGGGTTCGGAAGACGGACTCGAGGATTCCAATGAATGGGCACGCGTTTCCGAACTGTGTGACTTTGGACCGAGACGTGGCCGCGATGTAGCACGTCTACGGTCTATTGTACTGCAGTTGAAGCAGTCAGGAGTTCGTCCCAAATATCCACCACGCACCACCAAGGTGTAA
>DPOGS211917-PA
MDDFGDNFVQTEVDPAAEFLAREQNQLAGLEDELETGAPPPLAVSSGSNGLDDFVEIPSSAVFEANDLMDEEPSAPAVAPVTPVFRQEREEPEKIKLWREEQKKRLEEKDAEEEEKKQEMLKVAKKELEDWYKTHEEQISKTKAANRHHVETVLIKNFLFNAGRESANSTDTCVTVILNNICPNRNAEKALARGSEDGLEDSNEWARVSELCDFGPRRGRDVARLRSIVLQLKQSGVRPKYPPRTTKV-