DPOGS211922 | ||
---|---|---|
Transcript | DPOGS211922-TA | 438 bp |
Protein | DPOGS211922-PA | 145 aa |
Genomic position | DPSCF300011 + 168706-169332 | |
RNAseq coverage | 295x (Rank: top 38%) |
Annotation | ||||
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Heliconius | HMEL016693 | 3e-65 | 82.64% |   |
Bombyx | BGIBMGA000977-TA | 4e-58 | 91.07% |   |
Drosophila | mtSSB-PB | 1e-38 | 62.96% |   |
EBI UniRef50 | UniRef50_Q1HQ48 | 9e-62 | 85.94% | Mitochondrial single-stranded DNA-binding protein n=4 Tax=Arthropoda RepID=Q1HQ48_BOMMO |
NCBI RefSeq | NP_001040384.1 | 2e-62 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
NCBI nr blastp | gi|114051211 | 4e-61 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
NCBI nr blastx | gi|114051211 | 3e-60 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0003697 | 9.4e-37 | single-stranded DNA binding | |
GO:0006260 | 9.4e-37 | DNA replication | ||
KEGG pathway | nvi:100117646 | 8e-45 |   | |
  | K03111 (ssb) | maps-> | DNA replication | |
  |   |   | Homologous recombination | |
  |   |   | Mismatch repair | |
InterPro domain | [24-144] IPR011344 | 9.4e-37 | Single-strand DNA-binding | |
[32-144] IPR012340 | 1.2e-32 | Nucleic acid-binding, OB-fold | ||
[31-138] IPR016027 | 7.1e-25 | Nucleic acid-binding, OB-fold-like | ||
[35-137] IPR000424 | 2e-24 | Primosome PriB/single-strand DNA-binding | ||
Orthology group | MCL12750 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211922-TA
ATGTTTCAAACCTTGCTAAGAATCTTACCTCGTCAACCCGCTCATATTAACAAAATACATACAAGTGTGACAAGATTTGATAGCCAAAATTCTGAAAAGACCATCAACCAAGTCACTTTATTGGGTAGAGTTGGTGCTGATCCTCAAAAACGGGGTTCTGTGGAACATCCAGTTATAAATTTCCCGTTAGCTACACATTTTAGCTACAAATATGAATCAGGAGATATTCTGCAGAAGACAGACTGGCACAGAGTTAGCGTGTTCCGGCCAGGCCTCAGAGACACCGTTTACAAATATCTCAAAAAGGGTCAAAGAGTGTATGTAACTGGCAAATTATCCTACGGTGAGGTTAAACTTGATGATGGTCAAGTAAGAACAGCTTCTACGGTGATCGCCGATGATATTATCTTCTTCCAAAGCCAGCCACAGGAGTCTTAA
>DPOGS211922-PA
MFQTLLRILPRQPAHINKIHTSVTRFDSQNSEKTINQVTLLGRVGADPQKRGSVEHPVINFPLATHFSYKYESGDILQKTDWHRVSVFRPGLRDTVYKYLKKGQRVYVTGKLSYGEVKLDDGQVRTASTVIADDIIFFQSQPQES-