| DPOGS211922 | ||
|---|---|---|
| Transcript | DPOGS211922-TA | 438 bp |
| Protein | DPOGS211922-PA | 145 aa |
| Genomic position | DPSCF300011 + 168706-169332 | |
| RNAseq coverage | 295x (Rank: top 38%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016693 | 3e-65 | 82.64% | |
| Bombyx | BGIBMGA000977-TA | 4e-58 | 91.07% | |
| Drosophila | mtSSB-PB | 1e-38 | 62.96% | |
| EBI UniRef50 | UniRef50_Q1HQ48 | 9e-62 | 85.94% | Mitochondrial single-stranded DNA-binding protein n=4 Tax=Arthropoda RepID=Q1HQ48_BOMMO |
| NCBI RefSeq | NP_001040384.1 | 2e-62 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
| NCBI nr blastp | gi|114051211 | 4e-61 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
| NCBI nr blastx | gi|114051211 | 3e-60 | 85.94% | mitochondrial single-stranded DNA-binding protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003697 | 9.4e-37 | single-stranded DNA binding | |
| GO:0006260 | 9.4e-37 | DNA replication | ||
| KEGG pathway | nvi:100117646 | 8e-45 | ||
| K03111 (ssb) | maps-> | DNA replication | ||
| Homologous recombination | ||||
| Mismatch repair | ||||
| InterPro domain | [24-144] IPR011344 | 9.4e-37 | Single-strand DNA-binding | |
| [32-144] IPR012340 | 1.2e-32 | Nucleic acid-binding, OB-fold | ||
| [31-138] IPR016027 | 7.1e-25 | Nucleic acid-binding, OB-fold-like | ||
| [35-137] IPR000424 | 2e-24 | Primosome PriB/single-strand DNA-binding | ||
| Orthology group | MCL12750 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211922-TA
ATGTTTCAAACCTTGCTAAGAATCTTACCTCGTCAACCCGCTCATATTAACAAAATACATACAAGTGTGACAAGATTTGATAGCCAAAATTCTGAAAAGACCATCAACCAAGTCACTTTATTGGGTAGAGTTGGTGCTGATCCTCAAAAACGGGGTTCTGTGGAACATCCAGTTATAAATTTCCCGTTAGCTACACATTTTAGCTACAAATATGAATCAGGAGATATTCTGCAGAAGACAGACTGGCACAGAGTTAGCGTGTTCCGGCCAGGCCTCAGAGACACCGTTTACAAATATCTCAAAAAGGGTCAAAGAGTGTATGTAACTGGCAAATTATCCTACGGTGAGGTTAAACTTGATGATGGTCAAGTAAGAACAGCTTCTACGGTGATCGCCGATGATATTATCTTCTTCCAAAGCCAGCCACAGGAGTCTTAA
>DPOGS211922-PA
MFQTLLRILPRQPAHINKIHTSVTRFDSQNSEKTINQVTLLGRVGADPQKRGSVEHPVINFPLATHFSYKYESGDILQKTDWHRVSVFRPGLRDTVYKYLKKGQRVYVTGKLSYGEVKLDDGQVRTASTVIADDIIFFQSQPQES-