Monarch geneset OGS2.0

DPOGS212121
TranscriptDPOGS212121-TA354 bp
ProteinDPOGS212121-PA117 aa
Genomic positionDPSCF300038 - 160953-161942
RNAseq coverage545x (Rank: top 23%)
Annotation
HeliconiusHMEL0077323e-6498.29% 
BombyxBGIBMGA006752-TA1e-6396.58% 
DrosophilaRpb11-PA2e-5685.47% 
EBI UniRef50UniRef50_Q7PVQ94e-5283.76%DNA-directed RNA polymerase II subunit RPB11 n=20 Tax=Eukaryota RepID=RPB11_ANOGA
NCBI RefSeqXP_966925.12e-5687.18%PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa polypeptide [Tribolium castaneum]
NCBI nr blastpgi|910904445e-5587.18%PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa polypeptide [Tribolium castaneum]
NCBI nr blastxgi|3407112675e-5488.03%PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Bombus terrestris]
Group
Gene OntologyGO:00038993.7e-38DNA-directed RNA polymerase activity
GO:00036773.7e-38DNA binding
GO:00063513.7e-38transcription, DNA-dependent
GO:00469834.4e-10protein dimerization activity
KEGG pathwaytca:6553046e-56 
 K03008 (RPB11)maps-> Huntington's disease
    Purine metabolism
    Pyrimidine metabolism
    RNA polymerase
InterPro domain[1-113] IPR0090253.7e-38DNA-directed RNA polymerase, RBP11-like
[33-102] IPR0112614.4e-10DNA-directed RNA polymerase, dimerisation
Orthology groupMCL12021 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS212121-TA
ATGAACGCACCACCGACATTCGAATCATTTTTACTGTATGATGGAGAAAAGAAGGTTCAGAAAGAAGAAGATACAAAAGTTACAAATGCGGCTATATTTACTGTTAATAAGGAGGACCATTCGCTTGGAAACATGATCAGACACCAACTTTTAAAGGACCCGAAAGTATTATTTGCAGGCTATAAAGTACCACATCCTTTAGAACATAAATTTGTTTTGCGTATTCAAACAACTTCGGACTATACACCTCAAGATGCCTTTATGAATGCCATAACAGATTTAACATCTGAGTTATCTTTGTTTGAAGAACGATTTAAGGAAGCAATTAAAGAAAAGAAAGATGGCTTGGACTGA

Protein sequence:

>DPOGS212121-PA
MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD-