DPOGS212121 | ||
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Transcript | DPOGS212121-TA | 354 bp |
Protein | DPOGS212121-PA | 117 aa |
Genomic position | DPSCF300038 - 160953-161942 | |
RNAseq coverage | 545x (Rank: top 23%) |
Annotation | ||||
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Heliconius | HMEL007732 | 3e-64 | 98.29% |   |
Bombyx | BGIBMGA006752-TA | 1e-63 | 96.58% |   |
Drosophila | Rpb11-PA | 2e-56 | 85.47% |   |
EBI UniRef50 | UniRef50_Q7PVQ9 | 4e-52 | 83.76% | DNA-directed RNA polymerase II subunit RPB11 n=20 Tax=Eukaryota RepID=RPB11_ANOGA |
NCBI RefSeq | XP_966925.1 | 2e-56 | 87.18% | PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa polypeptide [Tribolium castaneum] |
NCBI nr blastp | gi|91090444 | 5e-55 | 87.18% | PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa polypeptide [Tribolium castaneum] |
NCBI nr blastx | gi|340711267 | 5e-54 | 88.03% | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Bombus terrestris] |
Group | ||||
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Gene Ontology | GO:0003899 | 3.7e-38 | DNA-directed RNA polymerase activity | |
GO:0003677 | 3.7e-38 | DNA binding | ||
GO:0006351 | 3.7e-38 | transcription, DNA-dependent | ||
GO:0046983 | 4.4e-10 | protein dimerization activity | ||
KEGG pathway | tca:655304 | 6e-56 |   | |
  | K03008 (RPB11) | maps-> | Huntington's disease | |
  |   |   | Purine metabolism | |
  |   |   | Pyrimidine metabolism | |
  |   |   | RNA polymerase | |
InterPro domain | [1-113] IPR009025 | 3.7e-38 | DNA-directed RNA polymerase, RBP11-like | |
[33-102] IPR011261 | 4.4e-10 | DNA-directed RNA polymerase, dimerisation | ||
Orthology group | MCL12021 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212121-TA
ATGAACGCACCACCGACATTCGAATCATTTTTACTGTATGATGGAGAAAAGAAGGTTCAGAAAGAAGAAGATACAAAAGTTACAAATGCGGCTATATTTACTGTTAATAAGGAGGACCATTCGCTTGGAAACATGATCAGACACCAACTTTTAAAGGACCCGAAAGTATTATTTGCAGGCTATAAAGTACCACATCCTTTAGAACATAAATTTGTTTTGCGTATTCAAACAACTTCGGACTATACACCTCAAGATGCCTTTATGAATGCCATAACAGATTTAACATCTGAGTTATCTTTGTTTGAAGAACGATTTAAGGAAGCAATTAAAGAAAAGAAAGATGGCTTGGACTGA
>DPOGS212121-PA
MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD-