DPOGS212214 | ||
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Transcript | DPOGS212214-TA | 327 bp |
Protein | DPOGS212214-PA | 108 aa |
Genomic position | DPSCF301566 + 219-763 | |
RNAseq coverage | 102x (Rank: top 61%) |
Annotation | ||||
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Heliconius | HMEL005760 | 2e-39 | 61.34% |   |
Bombyx | BGIBMGA009181-TA | 1e-13 | 65.96% |   |
Drosophila | DNA-ligI-PA | 4e-33 | 54.72% |   |
EBI UniRef50 | UniRef50_F6Y1Y0 | 1e-39 | 69.44% | DNA ligase (Fragment) n=3 Tax=Ciona intestinalis RepID=F6Y1Y0_CIOIN |
NCBI RefSeq | XP_001606591.1 | 2e-39 | 66.67% | PREDICTED: similar to ENSANGP00000010547 [Nasonia vitripennis] |
NCBI nr blastp | gi|270004895 | 2e-38 | 66.67% | hypothetical protein TcasGA2_TC003800 [Tribolium castaneum] |
NCBI nr blastx | gi|198427151 | 7e-37 | 69.44% | PREDICTED: similar to ligase I [Ciona intestinalis] |
Group | ||||
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Gene Ontology | GO:0003677 | 2.1e-15 | DNA binding | |
GO:0006281 | 2.1e-15 | DNA repair | ||
GO:0003910 | 2.1e-15 | DNA ligase (ATP) activity | ||
GO:0006310 | 2.1e-15 | DNA recombination | ||
GO:0005524 | 7.4e-12 | ATP binding | ||
KEGG pathway | cin:100181519 | 3e-39 |   | |
  | K10747 (LIG1) | maps-> | Base excision repair | |
  |   |   | DNA replication | |
  |   |   | Mismatch repair | |
  |   |   | Nucleotide excision repair | |
InterPro domain | [3-51] IPR012308 | 2.1e-15 | DNA ligase, ATP-dependent, N-terminal | |
[49-107] IPR012310 | 7.4e-12 | DNA ligase, ATP-dependent, central | ||
Orthology group | MCL34928 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212214-TA
AGCCTCATAGACGAATACGCGCTCATCATCAAGACGACGTACTGCGAGTGTCCCAACTATGACCTGATAGTTCCAGTACTGCTGCAGCACGGCGTGAGGTCTCTGCCAGAACACTGCCGCCTAACTCCAGGTCTGCCACTCAAACCCATGCTGGCTCACCCCACTAAAGGAGTACATGAAGTCTTCAACAGGTTCGACGGCTCGGTTTTCACATGCGAGTATAAATACGACGGCGAGCGCGCTCAGATACATGTGCCGGGGTGCGGGAGACCAGACCTGGAGCGCGCCGCCATATACAGCAGGAACCAGGAGGACAACACGTCGTGA
>DPOGS212214-PA
SLIDEYALIIKTTYCECPNYDLIVPVLLQHGVRSLPEHCRLTPGLPLKPMLAHPTKGVHEVFNRFDGSVFTCEYKYDGERAQIHVPGCGRPDLERAAIYSRNQEDNTS-