DPOGS212286 | ||
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Transcript | DPOGS212286-TA | 393 bp |
Protein | DPOGS212286-PA | 130 aa |
Genomic position | DPSCF300077 + 446428-448131 | |
RNAseq coverage | 33613x (Rank: top 0%) |
Annotation | ||||
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Heliconius | HMEL014927 | 3e-61 | 91.54% |   |
Bombyx | BGIBMGA011446-TA | 2e-60 | 90.77% |   |
Drosophila | RpS30-PA | 1e-35 | 63.36% |   |
EBI UniRef50 | UniRef50_G4VBV1 | 2e-29 | 52.67% | Putative 40s ribosomal protein S30 n=3 Tax=Schistosoma RepID=G4VBV1_SCHMA |
NCBI RefSeq | NP_001037281.1 | 1e-57 | 89.23% | ribosomal protein S30 [Bombyx mori] |
NCBI nr blastp | gi|342356351 | 2e-58 | 91.54% | ribosomal protein S30 [Heliconius melpomene cythera] |
NCBI nr blastx | gi|342356351 | 2e-61 | 91.54% | ribosomal protein S30 [Heliconius melpomene cythera] |
Group | ||||
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Gene Ontology | GO:0005840 | 8.9e-72 | ribosome | |
GO:0006412 | 8.9e-72 | translation | ||
GO:0005622 | 8.9e-72 | intracellular | ||
GO:0003735 | 8.9e-72 | structural constituent of ribosome | ||
GO:0005515 | 7.4e-07 | protein binding | ||
KEGG pathway | nvi:100115833 | 1e-48 |   | |
  | K02983 (RP-S30e, RPS30) | maps-> | Ribosome | |
InterPro domain | [2-131] IPR006846 | 8.9e-72 | Ribosomal protein S30 | |
[7-65] IPR000626 | 7.4e-07 | Ubiquitin | ||
Orthology group | MCL10848 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212286-TA
ATGCAGTTGCACATCAGAGGACAATCTACTCACATCCTAGATGTGAATGGCGAGGAATCCATTGCTCAAATTAAGGAGCGTATCCGTGCGCTTTCTGACGTTGGAGCTGAGGACTTAACTCTGTCAGTCTGTGGAGCCCCTCTTGAGGATGGCACTCTCGTATCTGAGCTCTCATCAACAGAACTTGATCTTACCGTGCCACTGCTCGGTGGTAAAGTGCACGGTTCTCTAGCTCGTGCTGGTAAGGTAAAGGGACAAACCCCAAAGGTAGAGAAACAACAGAAAAAGAAGAAGAAGACCGGCCGTGCTAAACGTAGGATCCAATACAACAGAAGGTTTGTGAACGTCGTCCAGACCTTCGGCCGTCGGCGCGGACCCAACTCCAACTCTTAG
>DPOGS212286-PA
MQLHIRGQSTHILDVNGEESIAQIKERIRALSDVGAEDLTLSVCGAPLEDGTLVSELSSTELDLTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKKKKKTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS-