| DPOGS212308 | ||
|---|---|---|
| Transcript | DPOGS212308-TA | 417 bp |
| Protein | DPOGS212308-PA | 138 aa |
| Genomic position | DPSCF300549 - 20096-20512 | |
| RNAseq coverage | 426x (Rank: top 29%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014412 | 2e-75 | 95.65% | |
| Bombyx | BGIBMGA001825-TA | 9e-62 | 90.51% | |
| Drosophila | CG17768-PB | 2e-49 | 85.86% | |
| EBI UniRef50 | UniRef50_B4MUB5 | 1e-49 | 81.65% | GK14878 n=6 Tax=Endopterygota RepID=B4MUB5_DROWI |
| NCBI RefSeq | XP_002014371.1 | 9e-52 | 74.62% | GL19160 [Drosophila persimilis] |
| NCBI nr blastp | gi|195146798 | 2e-50 | 74.62% | GL19160 [Drosophila persimilis] |
| NCBI nr blastx | gi|345488677 | 2e-61 | 83.57% | PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia vitripennis] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | dpe:Dper_GL19160 | 3e-51 | ||
| K12623 (LSM4) | maps-> | RNA degradation | ||
| Spliceosome | ||||
| InterPro domain | [3-135] IPR010920 | 6.6e-33 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [5-71] IPR006649 | 1e-19 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [6-69] IPR001163 | 4.9e-15 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL13314 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212308-TA
ATGTTACCGCTATCATTATTAAGAACCGCCCAGAACCATCCCATGTTGGTGGAACTCAAGAACGGCGAAACATACAACGGACATTTAGTTAGTTGCGATAATTGGATGAATATAAATTTAAGGGAAGTAATTTGCACGTCCCGGGACGGCGACAAGTTCTGGCGGATGCCCGAATGCTACATCCGGGGGAGCACCATCAAATATCTCAGAATACCAGACGAAGTTATCGACATGGTAAAGGAAGAGACACAAGTGAAATCCCGCGGCCGAGGCGAGATCTCCAAAGGCCGCGGCGGTCAGAACATGAGATCTGGTCGAGGTGGCAGCCGCGGCGCCTTCGGCAACCGTGGAAGAGCGGCGCCTCTGTCGCGCGGAGGAGGCAACGCGGGCCGGCCGCAGAACAAGAATAAAAAGTAG
>DPOGS212308-PA
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKSRGRGEISKGRGGQNMRSGRGGSRGAFGNRGRAAPLSRGGGNAGRPQNKNKK-