DPOGS212387 | ||
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Transcript | DPOGS212387-TA | 663 bp |
Protein | DPOGS212387-PA | 220 aa |
Genomic position | DPSCF300019 + 820368-821421 | |
RNAseq coverage | 426x (Rank: top 29%) |
Annotation | ||||
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Heliconius | HMEL013385 | 3e-112 | 94.09% |   |
Bombyx | BGIBMGA012118-TA | 5e-99 | 88.84% |   |
Drosophila | snf-PA | 5e-80 | 75.34% |   |
EBI UniRef50 | UniRef50_P08579 | 6e-80 | 65.79% | U2 small nuclear ribonucleoprotein B'' n=93 Tax=Eukaryota RepID=RU2B_HUMAN |
NCBI RefSeq | NP_001161808.1 | 1e-95 | 76.62% | U1 small nuclear ribonucleoprotein A [Apis mellifera] |
NCBI nr blastp | gi|380024353 | 3e-95 | 77.06% | PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis florea] |
NCBI nr blastx | gi|91078752 | 2e-97 | 83.48% | PREDICTED: similar to U1 small nuclear ribonucleoprotein A [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0000166 | 8.9e-24 | nucleotide binding | |
GO:0003676 | 1.6e-14 | nucleic acid binding | ||
KEGG pathway | tgu:100217561 | 2e-80 |   | |
  | K11094 (SNRPB2) | maps-> | Spliceosome | |
InterPro domain | [4-89] IPR012677 | 8.9e-24 | Nucleotide-binding, alpha-beta plait | |
[8-82] IPR000504 | 1.6e-14 | RNA recognition motif domain | ||
Orthology group | MCL12124 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212387-TA
ATGGACATACGGCCGAACCACACAATATATATAAACAATCTCAATGAAAAAATTAAGAAGGAGGAACTTAAAAAGTCCCTCTATGCTATATTTTCTCAATTTGGGCAGATTTTAGAAATCGTTGCACTGAAAACACTCAAGATGAGGGGTCAAGCATTTGTTATATTCAAAGAAATATCCAGTGCAACCGTCGCTTTGAGGAGTATGCAAGGATTCCCATTTTATGACAAACCTATGAGAATACAGTATTGTAAAACTGATAGTGATGTTATAGCAAAGATGAAGGGAACCTTCCAAGAACGACCTAAAAGACCAAAACTGCCAAAAGGTTCCGATGAGAAGAAGAAAAAGAACAAAGATCCCAATAGACCAAATGTGCCTGGATTTGGACAACCAAGTGTTCTTAACAATGTTAACGCTGAACAGCCACCAAACCAAATACTGTTTCTTACTAATCTTCCTGATGAAACATCAGAAATGATGTTATCTATGTTGTTTAACCAGTTCCCTGGTTTTAAGGAAGTTCGACTGGTGCCAAACAGACATGATATCGCCTTTGTGGAGTTTGCTAATGAAATGCAATCAGCGGCTGCTAAAGAAGCCCTCCAAGGCTTCAAGATCACTCCCACTCATGCTATGAAAATATCATTTGCAAAGAAATAG
>DPOGS212387-PA
MDIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRPKLPKGSDEKKKKNKDPNRPNVPGFGQPSVLNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFANEMQSAAAKEALQGFKITPTHAMKISFAKK-