| DPOGS212409 | ||
|---|---|---|
| Transcript | DPOGS212409-TA | 348 bp |
| Protein | DPOGS212409-PA | 115 aa |
| Genomic position | DPSCF300258 - 149740-150242 | |
| RNAseq coverage | 759x (Rank: top 17%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL021726 | 2e-54 | 85.09% | |
| Bombyx | BGIBMGA002809-TA | 2e-26 | 70.59% | |
| Drosophila | MED9-PC | 2e-24 | 48.91% | |
| EBI UniRef50 | UniRef50_E2AT38 | 4e-26 | 65.62% | Mediator of RNA polymerase II transcription subunit 9 n=3 Tax=Formicidae RepID=E2AT38_CAMFO |
| NCBI RefSeq | XP_970747.1 | 3e-31 | 56.25% | PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum] |
| NCBI nr blastp | gi|91090101 | 9e-30 | 56.25% | PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum] |
| NCBI nr blastx | gi|383849481 | 8e-30 | 63.64% | PREDICTED: mediator of RNA polymerase II transcription subunit 9-like [Megachile rotundata] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006357 | 3.2e-12 | regulation of transcription from RNA polymerase II promoter | |
| GO:0016592 | 3.2e-12 | mediator complex | ||
| GO:0001104 | 3.2e-12 | RNA polymerase II transcription cofactor activity | ||
| KEGG pathway | ||||
| InterPro domain | [43-108] IPR011425 | 3.2e-12 | Mediator complex, subunit Med9 | |
| Orthology group | MCL14329 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212409-TA
ATGGATAACACAGACCACTCCGAACAAAACAATTTCAGTCCTCTCACTGTCCAAGAAGTAGACGTAGATTTTTTACCGATTGTGTACGAAATCATACGAAGTGTTGAACGAGACTTCCACGATAATTCCGCTAAAGTACGAGAATCCCAGGATTGCAGTTTGAAAGTATTAGAGTTACAGAGGAAATTCGACGTCGCTCGTTCTCAAATTAAGCGGTTGCCAGGAATTGAATACAATAAACAAGATCAGTTGAAGCAATTCGAGATTCTCAGTACTCAACTGCGACTGAAGAGAGAGTTGTTACAGAGATACCGTAATATGTGCTCTTTTGAAACATCATTCAAGTGA
>DPOGS212409-PA
MDNTDHSEQNNFSPLTVQEVDVDFLPIVYEIIRSVERDFHDNSAKVRESQDCSLKVLELQRKFDVARSQIKRLPGIEYNKQDQLKQFEILSTQLRLKRELLQRYRNMCSFETSFK-