DPOGS212447 | ||
---|---|---|
Transcript | DPOGS212447-TA | 528 bp |
Protein | DPOGS212447-PA | 175 aa |
Genomic position | DPSCF300258 + 285807-286918 | |
RNAseq coverage | 10515x (Rank: top 1%) |
Annotation | ||||
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Heliconius | HMEL017563 | 4e-33 | 50.72% |   |
Bombyx | BGIBMGA002907-TA | 3e-57 | 68.39% |   |
Drosophila | CG9027-PD | 2e-44 | 48.60% |   |
EBI UniRef50 | UniRef50_Q6QVQ5 | 4e-43 | 50.87% | Superoxide dismutase [Cu-Zn] n=9 Tax=Nematocera RepID=Q6QVQ5_ANOGA |
NCBI RefSeq | NP_001037358.2 | 1e-57 | 64.20% | time interval measuring enzyme-esterase A4 [Bombyx mori] |
NCBI nr blastp | gi|73671225 | 1e-56 | 64.20% | diapause bioclock protein [Bombyx mandarina] |
NCBI nr blastx | gi|73671225 | 7e-59 | 64.20% | diapause bioclock protein [Bombyx mandarina] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0004784 | 2.5e-59 | superoxide dismutase activity | |
GO:0055114 | 2.5e-59 | oxidation-reduction process | ||
GO:0006801 | 9e-53 | superoxide metabolic process | ||
GO:0046872 | 9e-53 | metal ion binding | ||
KEGG pathway | dpo:Dpse_GA21488 | 2e-43 |   | |
  | K04565 (E1.15.1.1C, sodC, SOD1) | maps-> | Huntington's disease | |
  |   |   | Peroxisome | |
  |   |   | Amyotrophic lateral sclerosis (ALS) | |
  |   |   | Prion diseases | |
InterPro domain | [27-174] IPR024134 | 2.5e-59 | Superoxide dismutase (Cu/Zn) / chaperones | |
[35-174] IPR001424 | 9e-53 | Superoxide dismutase, copper/zinc binding domain | ||
Orthology group | MCL15798 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212447-TA
ATGCTTTACCATTTGCTATTTTTGTCGGTGGCAGGCGTTATTGTATCTGCGCAGAATGTTGGGAACGCACCGTTGAGAGCGATTGTTAAACTTTCAAGTCCCGACGGTCGTGATGTCCATGGAAATATTACCCTCACTCAGCTGGAGGGCAGGGTCCATGTTGAGGGTTCCATCTACGGTTTGCCCCCAGGACAGTACGGCTTCCACGTACATGAGACTGGAGACATAACTCGAGGCTGTATCTCCACTGGATCGCATTTCAACCCTGAGAAGAAAGACCACGGCCATCCCAGCGATGAAGTCCGTCACGTTGGAGACTTGGGGAACGTTGAATTTGATATGAACAGATTCAGTAACATCAATTTCGAAGACAAATTGATCGCTTTGTACGGACCCCACAACGTTCTTGGAAGGGCAATTGTCTTACACGAAAAGGCCGATGACTTCGGCAGATCAGACCATCCTGACTCCAGGAAGACGGGCAACGCTGGCGGACGAGTCGCGTGTGGAGTCATCGGCATCCTGTAA
>DPOGS212447-PA
MLYHLLFLSVAGVIVSAQNVGNAPLRAIVKLSSPDGRDVHGNITLTQLEGRVHVEGSIYGLPPGQYGFHVHETGDITRGCISTGSHFNPEKKDHGHPSDEVRHVGDLGNVEFDMNRFSNINFEDKLIALYGPHNVLGRAIVLHEKADDFGRSDHPDSRKTGNAGGRVACGVIGIL-