DPOGS212472 | ||
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Transcript | DPOGS212472-TA | 396 bp |
Protein | DPOGS212472-PA | 131 aa |
Genomic position | DPSCF300222 - 476748-477143 | |
RNAseq coverage | 5908x (Rank: top 2%) |
Annotation | ||||
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Heliconius | HMEL016813 | 2e-24 | 52.75% |   |
Bombyx | BGIBMGA007320-TA | 6e-52 | 81.06% |   |
Drosophila | His2B:CG17949-PA | 9e-25 | 54.95% |   |
EBI UniRef50 | UniRef50_Q5QNW6 | 4e-24 | 48.78% | Histone H2B type 2-F n=1521 Tax=root RepID=H2B2F_HUMAN |
NCBI RefSeq | XP_001176980.1 | 1e-25 | 47.97% | PREDICTED: similar to cleavage stage histone H2B [Strongylocentrotus purpuratus] |
NCBI nr blastp | gi|354480100 | 3e-25 | 49.21% | PREDICTED: histone H2B type 1-C/E/G-like [Cricetulus griseus] |
NCBI nr blastx | gi|331215417 | 4e-25 | 51.28% | histone H2B [Puccinia graminis f. sp. tritici CRL 75-36-700-3] |
Group | ||||
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Gene Ontology | GO:0005634 | 1.4e-38 | nucleus | |
GO:0003677 | 1.4e-38 | DNA binding | ||
GO:0006334 | 1.4e-38 | nucleosome assembly | ||
GO:0000786 | 1.4e-38 | nucleosome | ||
KEGG pathway | ago:AGOS_AGR183C | 8e-26 |   | |
  | K11252 (H2B) | maps-> | Systemic lupus erythematosus | |
InterPro domain | [26-123] IPR000558 | 1.4e-38 | Histone H2B | |
[7-124] IPR009072 | 3.6e-38 | Histone-fold | ||
[33-100] IPR007125 | 1.6e-16 | Histone core | ||
Orthology group | MCL10018 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212472-TA
ATGGCGCCGACAAAAGTACCGAAGAAACCTCTTAAATCTATGGAGAAGCCCATAGACAAGCCCATATCAAAGAGCAAGAAAATGAAGAAGAAGAATTATCAGAGCTTTTCAATATATCTATTCAAACTGTTGCGAAGCGTCACGAAAGATAACTTCGGAATATCCAGACATTCAATGTTGATCATGAATAACTTCGTGAACGACATGCTGGAGAAGATCGCTTCGGAAGCCGGTAAGCTGGTCTCCCATGGGAAGAAGACGACCCTTGGCAGTCGTGAGATCCAGAGCGCTATCCGCCTCCTAATCCCGGGGGAACTCGCTAAGCATGCCAACATCGAAGGCATGAAAGCTATCACAATGTATCACAACAGCACACAGAGGGATGAGAAGTCATAG
>DPOGS212472-PA
MAPTKVPKKPLKSMEKPIDKPISKSKKMKKKNYQSFSIYLFKLLRSVTKDNFGISRHSMLIMNNFVNDMLEKIASEAGKLVSHGKKTTLGSREIQSAIRLLIPGELAKHANIEGMKAITMYHNSTQRDEKS-