| DPOGS212516 | ||
|---|---|---|
| Transcript | DPOGS212516-TA | 387 bp |
| Protein | DPOGS212516-PA | 128 aa |
| Genomic position | DPSCF300222 + 471052-471438 | |
| RNAseq coverage | 179x (Rank: top 50%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL009331 | 2e-46 | 74.78% | |
| Bombyx | BGIBMGA009649-TA | 1e-43 | 81.74% | |
| Drosophila | His2A:CG33859-PA | 1e-43 | 73.83% | |
| EBI UniRef50 | UniRef50_A7TCZ1 | 2e-43 | 75.00% | Predicted protein n=12 Tax=Eukaryota RepID=A7TCZ1_NEMVE |
| NCBI RefSeq | XP_001640346.1 | 1e-44 | 73.45% | predicted protein [Nematostella vectensis] |
| NCBI nr blastp | gi|260789645 | 2e-43 | 73.45% | hypothetical protein BRAFLDRAFT_129443 [Branchiostoma floridae] |
| NCBI nr blastx | gi|325296845 | 1e-42 | 69.60% | histone 2A.X [Aplysia californica] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 1.3e-59 | nucleus | |
| GO:0003677 | 1.3e-59 | DNA binding | ||
| GO:0006334 | 1.3e-59 | nucleosome assembly | ||
| GO:0000786 | 1.3e-59 | nucleosome | ||
| KEGG pathway | bfo:BRAFLDRAFT_129443 | 3e-44 | ||
| K11251 (H2A) | maps-> | Systemic lupus erythematosus | ||
| InterPro domain | [2-115] IPR002119 | 1.3e-59 | Histone H2A | |
| [2-118] IPR009072 | 9.1e-52 | Histone-fold | ||
| [10-83] IPR007125 | 6.2e-23 | Histone core | ||
| Orthology group | MCL23356 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212516-TA
ATGTCTTCCAAAAGGAAGAGCAAGTCGCGTTCATCCCGCGCCGGTCTCCACTTCCCCGTCGGAAGAATCCACAAGATCCTAAGGAAAGGGAACTACGCGCCCAGGATCGGGGCTGGAGCGCCTGTCTACTTGGCAGCAGCCCTGGAATACTTATCAGCTGAAATACTGGAGCTGGCAACGGAAGTGGCTAAGGAGAACAACAAGACTAGAGTCATCCCCCGACACATACTGTTCGCCATCAAGAACGACGAGGAGCTCAACAGAATGCTGTCCGGAGTGACCATCTCTCAGGGCGGCGTGCTGCCCGCTATACACGCGCAGCTGCTGCCCAAGAAGACGGTCAAGAACACGCAGCCGTCACAGTCACAATCATCACAGTCATATTAA
>DPOGS212516-PA
MSSKRKSKSRSSRAGLHFPVGRIHKILRKGNYAPRIGAGAPVYLAAALEYLSAEILELATEVAKENNKTRVIPRHILFAIKNDEELNRMLSGVTISQGGVLPAIHAQLLPKKTVKNTQPSQSQSSQSY-