DPOGS212523 | ||
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Transcript | DPOGS212523-TA | 645 bp |
Protein | DPOGS212523-PA | 214 aa |
Genomic position | DPSCF300222 + 513854-514498 | |
RNAseq coverage | 904x (Rank: top 14%) |
Annotation | ||||
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Heliconius | HMEL009336 | 2e-34 | 52.11% |   |
Bombyx | BGIBMGA009792-TA | 2e-31 | 43.28% |   |
Drosophila | His1:CG33864-PA | 9e-18 | 47.56% |   |
EBI UniRef50 | UniRef50_Q2F5R0 | 3e-29 | 43.28% | Histone H1 n=1 Tax=Bombyx mori RepID=Q2F5R0_BOMMO |
NCBI RefSeq | NP_001040247.1 | 6e-30 | 43.28% | histone H1 [Bombyx mori] |
NCBI nr blastp | gi|114052476 | 9e-29 | 43.28% | histone H1 [Bombyx mori] |
NCBI nr blastx | gi|114052476 | 6e-39 | 44.92% | histone H1 [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0005634 | 3.1e-23 | nucleus | |
GO:0003677 | 3.1e-23 | DNA binding | ||
GO:0006334 | 3.1e-23 | nucleosome assembly | ||
GO:0000786 | 3.1e-23 | nucleosome | ||
KEGG pathway |   | |||
InterPro domain | [29-116] IPR011991 | 2.1e-26 | Winged helix-turn-helix transcription repressor DNA-binding | |
[34-104] IPR005818 | 3.1e-23 | Histone H1/H5 | ||
[46-63] IPR005819 | 1.9e-12 | Histone H5 | ||
Orthology group |   |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212523-TA
ATGTCCGAGGAATCTGATGTTGAGATGAAATCAGCGCCCATGAGGTCCAAGAGACCACCGGCCAGCCCGACCGCTGACACGCTTAAAGAACCAAAGAGGCTAACAACCAAGGAGATGATAAAAGAGGCCTTGACGGAACTAAGAAGCAGGAAGGGGACGTCTCTGTTCGCCATCAAGAAGTACCTGGAGCTCAAATACAACGTGGACGTGGAGAAAATAAAACATATCATAAAAAAATACATCAAAACCAGCGTCGAAGATGGGACTATAGTGCAGACTAAAGGTGTCGGCGCGTCCGGTTCATTTAAATTAGTCGAAAAGGAAAAGAAAGAAAAGAAAGTCAAGAAAGACAAAAAGGAGAAAAAAGGCAAAGTGACTGAGAATAAAGAAAATGCAGACAAAAAGATTAAGCCGAAAACTAAGAAAGAATCCAAAGATAAAGACGATGGAACAAAAAAAGTCAAAATAGATACGAAAAAGAAAAAAGAAAAAAAGGAAACAGTCAAGGGAACGGTCAAAGAGAAGAAGACTGATAAGGTGGTGAAGACGCCAGCCAAGAAGAGAACCGCCATGATGAAGAGGAAGAGCATCGGCTCCATCATCAAGCCGCCCAAGATGAAACCAGCTAAGGCAATTAAGGGTTAG
>DPOGS212523-PA
MSEESDVEMKSAPMRSKRPPASPTADTLKEPKRLTTKEMIKEALTELRSRKGTSLFAIKKYLELKYNVDVEKIKHIIKKYIKTSVEDGTIVQTKGVGASGSFKLVEKEKKEKKVKKDKKEKKGKVTENKENADKKIKPKTKKESKDKDDGTKKVKIDTKKKKEKKETVKGTVKEKKTDKVVKTPAKKRTAMMKRKSIGSIIKPPKMKPAKAIKG-