| DPOGS212586 | ||
|---|---|---|
| Transcript | DPOGS212586-TA | 456 bp |
| Protein | DPOGS212586-PA | 151 aa |
| Genomic position | DPSCF300245 - 425688-426143 | |
| RNAseq coverage | 9673x (Rank: top 1%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017955 | 1e-43 | 82.00% | |
| Bombyx | BGIBMGA005205-TA | 4e-41 | 73.86% | |
| Drosophila | Rsf1-PA | 5e-26 | 64.86% | |
| EBI UniRef50 | UniRef50_G6D108 | 1e-77 | 100.00% | Repressor splicing factor 1 n=3 Tax=Pancrustacea RepID=G6D108_DANPL |
| NCBI RefSeq | NP_001037670.1 | 2e-37 | 94.94% | repressor splicing factor 1 [Bombyx mori] |
| NCBI nr blastp | gi|112983080 | 3e-36 | 94.94% | repressor splicing factor 1 [Bombyx mori] |
| NCBI nr blastx | gi|112983080 | 2e-55 | 80.28% | repressor splicing factor 1 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0000166 | 7.9e-22 | nucleotide binding | |
| GO:0003676 | 7.7e-19 | nucleic acid binding | ||
| KEGG pathway | tad:TRIADDRAFT_64092 | 2e-17 | ||
| K12896 (SFRS7) | maps-> | Spliceosome | ||
| InterPro domain | [5-95] IPR012677 | 7.9e-22 | Nucleotide-binding, alpha-beta plait | |
| [7-75] IPR000504 | 7.7e-19 | RNA recognition motif domain | ||
| Orthology group | MCL16447 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212586-TA
ATGAGCTCCGGAGGAACACGCGTGTATGTCGGCGGACTCGTGGAGGGTATCAAAAAAGAGGATTTGGAAAGAGAATTCGATAAATATGGCAAATTAAATTCCGTGTGGGTCGCACTTAACCCCCCAGGTTTTGCTTTCATTGAATTTGAGAACATGCAAGAGGCGGAGGATGCCTGTAGTGCAATGAACGGCTTCGAAATGTTAGGCGCGACACTAAAAGTCGAATTGTCGAGAAAACGAGATGGGCCGCGTCGCGGCGGTGGTAACTTCAGGGGTGGCCGAGGTGGTAACTTCCGAGGTCGCCCGTTCGGCGGTTCGGGGGGATTCAGATCTGGGGGCTTCGGGGGCGAAGGTCGGATACCTTTCAAACGCAACAACCAGGGTAGCGGCTACGGGTCAGGAAACAGTGGCGGCGGCGGCAACTTCAGATCTAGGTCACCACTCTCTCGATTTTAA
>DPOGS212586-PA
MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENMQEAEDACSAMNGFEMLGATLKVELSRKRDGPRRGGGNFRGGRGGNFRGRPFGGSGGFRSGGFGGEGRIPFKRNNQGSGYGSGNSGGGGNFRSRSPLSRF-