DPOGS212671 | ||
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Transcript | DPOGS212671-TA | 384 bp |
Protein | DPOGS212671-PA | 127 aa |
Genomic position | DPSCF300198 + 146917-147475 | |
RNAseq coverage | 141x (Rank: top 55%) |
Annotation | ||||
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Heliconius | HMEL007514 | 1e-55 | 76.38% |   |
Bombyx | BGIBMGA004265-TA | 5e-47 | 65.35% |   |
Drosophila | CG7787-PA | 1e-27 | 48.31% |   |
EBI UniRef50 | UniRef50_B7QEH3 | 2e-25 | 49.09% | Guanine nucleotide exchange factor mss4, putative n=2 Tax=Ixodidae RepID=B7QEH3_IXOSC |
NCBI RefSeq | XP_967994.1 | 3e-28 | 52.14% | PREDICTED: similar to AGAP008798-PA [Tribolium castaneum] |
NCBI nr blastp | gi|91086113 | 8e-27 | 52.14% | PREDICTED: similar to AGAP008798-PA [Tribolium castaneum] |
NCBI nr blastx | gi|328783382 | 1e-25 | 54.21% | PREDICTED: guanine nucleotide exchange factor MSS4 homolog [Apis mellifera] |
Group | ||||
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Gene Ontology | GO:0007264 | 3.7e-26 | small GTPase mediated signal transduction | |
GO:0005085 | 3.7e-26 | guanyl-nucleotide exchange factor activity | ||
KEGG pathway | bmy:Bm1_38870 | 1e-06 |   | |
  | K12622 (LSM3) | maps-> | RNA degradation | |
  |   |   | Spliceosome | |
InterPro domain | [19-126] IPR011323 | 2.5e-36 | Mss4/translationally controlled tumour-associated TCTP | |
[16-127] IPR011057 | 1.6e-32 | Mss4-like | ||
[49-126] IPR007515 | 3.7e-26 | Mss4 | ||
Orthology group | MCL12727 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212671-TA
ATGTCTGATACAGAGATCGTACAAAGTAAATCAGAAGAAGCTTCGAGTGAGTTCGTAGAAGATGGAAGTAACAAATTGGTTGTAAAATGCAAATTTTGTGGTTCGAAAATATTAGAAAAGAAAACTGGAAAGTTTGTAGTACAAGAGATGAATCTACCTCTAATGCATCAAGACACTAGAAAAGAAGGTGAATTACAATCAGAAAAGATAACTGAATTCTATCATGTAGAAAACATGTATACATTTGAGAACATAGGATTCACTCTCACCGTCGATAATTACAAGTACCTGAGCTGTGCCGACTGTGATGCGGGGCCGGTCGGATACTACGACATGAACACGAAACATAGTTATGTAGCATTATCTAGAGTAGAACACGCTTAG
>DPOGS212671-PA
MSDTEIVQSKSEEASSEFVEDGSNKLVVKCKFCGSKILEKKTGKFVVQEMNLPLMHQDTRKEGELQSEKITEFYHVENMYTFENIGFTLTVDNYKYLSCADCDAGPVGYYDMNTKHSYVALSRVEHA-