DPOGS212700 | ||
---|---|---|
Transcript | DPOGS212700-TA | 813 bp |
Protein | DPOGS212700-PA | 270 aa |
Genomic position | DPSCF300012 - 842803-844355 | |
RNAseq coverage | 148x (Rank: top 54%) |
Annotation | ||||
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Heliconius | HMEL015534 | 1e-91 | 83.33% |   |
Bombyx | BGIBMGA013165-TA | 9e-48 | 63.09% |   |
Drosophila | Rad1-PA | 9e-40 | 33.58% |   |
EBI UniRef50 | UniRef50_D6X3Z8 | 4e-46 | 36.02% | Putative uncharacterized protein n=1 Tax=Tribolium castaneum RepID=D6X3Z8_TRICA |
NCBI RefSeq | XP_969960.1 | 9e-47 | 36.02% | PREDICTED: similar to AGAP002255-PA [Tribolium castaneum] |
NCBI nr blastp | gi|91091626 | 2e-45 | 36.02% | PREDICTED: similar to AGAP002255-PA [Tribolium castaneum] |
NCBI nr blastx | gi|170063249 | 4e-45 | 38.04% | checkpoint protein [Culex quinquefasciatus] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005634 | 1e-56 | nucleus | |
GO:0006281 | 1e-56 | DNA repair | ||
GO:0003684 | 1e-56 | damaged DNA binding | ||
GO:0008853 | 1e-56 | exodeoxyribonuclease III activity | ||
KEGG pathway | aga:AgaP_AGAP002255 | 3e-43 |   | |
  | K02830 (HRAD1, RAD17) | maps-> | Meiosis - yeast | |
  |   |   | Cell cycle - yeast | |
InterPro domain | [7-270] IPR003021 | 1e-56 | Repair protein Rad1/Rec1 | |
[34-47] IPR003011 | 4.8e-15 | Repair protein Rad1 | ||
Orthology group | MCL12569 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212700-TA
ATGGATGATGGGACTTCTCAGTATTATTTCACTGCGTGTATGGACTCGGGTAAAACATTGTACAACATATTGAAATCCATACAATTTCAAGAGTGCGCAGTATTTTGTGCTATGCAGGAAGGTCTGAAACTCACAGTGGAAGAAGGAAAATGTGTCCAAGCCTCAGCATATATCCCGTCGGACAATTTCACTGAGTACCATGTTAGAGACGATGTTGATGTTTTGTTTAAAATAAACATATCTGTGTTGACTGAATGTCTCAATATATTCGGAGCGAACGAAGATTCCAGTTTGAAGATGTACTACAGATGCGAGGGCTCCCCTTTACTGCTCGTCCTTCAACCCCAATCGATGATCAATGTGATGACAGATTGCGAGATAGCAACACAGATTGCCGACTCAATACTGGAGTTGAGAGATGAAGATGTGCCAGAAGTAGCTAAGCTAGTATTGAAGGCTTCAGCGTTTATGGGGCTGTTGGCGGACTTGGAACGCTCCTGTGATACTATCGAGATTAATCTCTCCCCAGAACATCCTAATGTCAGCATTATTACATACGGAATGCAGGATAGGTCTTGTATAGATGTACCTAAGTCTTCGGACATGGTGCAGAGTTTTAGCTGCAGACAAGCAATCAGGCTGAAGTACCAGTTGTACCATCTCAGACTCACTATGAAAGCGTTGGCTATATCTTCAAAGGTAGTGTTACGTTCCAGTTCAAACGGTCTCCTCCTGATACAGCTGAAGCTCGAGAAGGAAGATCAAAGACAAATGTTCACAGAATTCTTCATATTGCCCTTATTGGATGACTAG
>DPOGS212700-PA
MDDGTSQYYFTACMDSGKTLYNILKSIQFQECAVFCAMQEGLKLTVEEGKCVQASAYIPSDNFTEYHVRDDVDVLFKINISVLTECLNIFGANEDSSLKMYYRCEGSPLLLVLQPQSMINVMTDCEIATQIADSILELRDEDVPEVAKLVLKASAFMGLLADLERSCDTIEINLSPEHPNVSIITYGMQDRSCIDVPKSSDMVQSFSCRQAIRLKYQLYHLRLTMKALAISSKVVLRSSSNGLLLIQLKLEKEDQRQMFTEFFILPLLDD-