Monarch geneset OGS2.0

DPOGS212816
TranscriptDPOGS212816-TA3834 bp
ProteinDPOGS212816-PA1277 aa
Genomic positionDPSCF300086 - 460404-470764
RNAseq coverage287x (Rank: top 38%)
Annotation
HeliconiusHMEL0081850.090.89% 
BombyxBGIBMGA000760-TA0.083.59% 
DrosophilaCG17209-PC0.066.44% 
EBI UniRef50UniRef50_Q4S3H60.055.80%DNA-directed RNA polymerase (Fragment) n=8 Tax=Metazoa RepID=Q4S3H6_TETNG
NCBI RefSeqXP_318130.40.071.12%AGAP004703-PA [Anopheles gambiae str. PEST]
NCBI nr blastpgi|3407118590.070.68%PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus terrestris]
NCBI nr blastxgi|1582980440.071.12%AGAP004703-PA [Anopheles gambiae str. PEST]
Group
Gene OntologyGO:00038990DNA-directed RNA polymerase activity
GO:00325490ribonucleoside binding
GO:00056340nucleus
GO:00082700zinc ion binding
GO:00063510transcription, DNA-dependent
GO:00036772.7e-125DNA binding
KEGG pathwayaga:AgaP_AGAP0047030.0 
 K03018 (RPC1)maps-> Cytosolic DNA-sensing pathway
    Purine metabolism
    Pyrimidine metabolism
    RNA polymerase
InterPro domain[1-1275] IPR0157000DNA-directed RNA polymerase III largest subunit
[116-446] IPR0065922.7e-125RNA polymerase, N-terminal
[733-1203] IPR0070811.3e-97RNA polymerase Rpb1, domain 5
[251-416] IPR0007224.2e-67RNA polymerase, alpha subunit
[421-595] IPR0070666e-36RNA polymerase Rpb1, domain 3
[13-209] IPR0070805.6e-34RNA polymerase Rpb1, domain 1
[624-726] IPR0070832.1e-31RNA polymerase Rpb1, domain 4
Orthology groupMCL11230 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS212816-TA
ATGCCTAAAGAGCAGTACCGAGAGACTTATGTCGGCAGAAAAATTTCCCATGTTACTTTTAATGTGGATAGTGCAACGGAAATCCAGCAAGCAGCTCATATTCAAGTGATAACAAAGAACTTGTATGCTCAGGATGGACAGAGAGTACCAGCTAGCTATGGAGTGCTGGACAGACGCATGGGGACAAACCAGAAAGATGCCAACTGTGAAACATGTGGTTTAGGTCTAGCTGAGTGTGTTGGTCACTATGGCTATGTGGAACTAGCTCTACCGGTGTTCCATGTCGGATACTTCAGATCTATTATAACTATACTTCAGACTATTTGTAAGGCAATTAACTGTGCCAAAGTAATGCTTCCGGATACAATCAAGAAATCGTTCAGTCGTAAATTCATGCATCCAGATTTAACCTACCTGCATAAAAAGAATCTACGGGCAGCCGTTTTAAAGAAAGCCAAGACATGCACAAAATGCCCGTACTGTGAATCCCTAAATGGCATCGTAAAGAAGAGTCCAGCGGGAATATTGAAAATTATCCACGATAAGTACAGAACAAAGAAACCCACAGACCCTGCGGTTCAAAAGGTGTTGAAAGATTTCAACGAGGCCAAGGAATCTAATAAGGAACTGGCGTCCATGATTAACAGCGGCTTGATAATAGAAATGAGCCCATTAGAACCCAAAAAACCGGGTCGTGGTCTGGTTCAAAGGCTGAAAGGCAAGCAAGGTCGCTTCCGTGGGAATCTATCAGGAAAGAGAGTGGATTTTTCAAGCAGAACTGTCATCTCACCGGATCCCAACCTACAGATACAGGAGGTGGGTGTTCCTGTGCATGTGGCCAAGATCCTGACGTACCCGGAGCGCGTGTTCCCGGCCAACCTCCAGTGGCTCCGACAGCTGGTGAGGAACGGCCCGGACGTTCACCCGGGGGCCAACTACGTCCAGCAACGAGGGGTCAGCCACAAGAAGTACCTCAAGTACGGGAACAGGGACAAGATTGCGCAGGAGTTGAAGTGCGGTGACACAGTGGAGCGCCATCTGGTGGACGGAGACGTGGTGCTGTTCAACCGCCAGCCGTCACTGCACAAGCTGTCCATCATGTGTCACAGGGCGAGGGTACAGCCGCAGAGGACGTTCCGCTTCAACGAGTGCGTCTGCACTCCTTACAACGCCGACTTCGACGGAGACGAGATGAACATGCACCTGCCGCAGACGGAGGAGGCGCGGGCGGAGGCGCTCATACTCATGGGGAACAAGTCTAACCTGGTGACTCCTCGGAACGGCGAGCTCCTGATCGCTGCGACCCAGGACTTTATAACGGGTGGGTACCTCATCACTCAGCGGGACAGTTTCTTCACGCTGCCGGAAGCCCGCCAGCTGGTCGCGTGTCTGCTGGCGGGGCCCGACTCCACCATGAGGGTGGACATGCCGCCGCCAGCCATCCTCAAGCCGAGGATGCTTTGGACCGGCAAACAGATATTCAGTCTGATAATGAAGCCCAACAAGCGGTGTGAGGTGAAAGCCAACTTGGAAACGAAGGGCAAGAACTACACCGGCAACCAGGACATGTGCGTTCAGGATTCATATGTTATAATTCGTAACTCGGAGCTGATCTGCGGTTCCATGGACAAGAGCACCCTCGGATCTGGCACCAAGAACTCCGTGTTCTACATCCTGTTGAGGGACTGGGGCGAGGAGTACGCCGTCAGGGGCATGTGGAGGCTGGCGCGTATGGCCTCCTACTACATGATGAACCGCGGGTTCAGCTTCGGCATCATCGACGTGACGCCCGGCAACAAACTCATTGAGGCCAAGAACAAGCTGCTGGAGTCAGGGTACTCTAAGTGCGACGGATATATCCTGGAGATGGAGAAAGGAACCCTGCAGTGTCAACCTGGCTGTTCCATGGAGGAGACCCTAGAGGCGATCATGCTCAGCGAGCTCAGCAGCATTAGAGAACTGGCCGCCAAGGCTTGTTTCCGCGAGCTGCATCCAACGAACGCCCCGCTCATCATGGCTCAGAGCGGATCCAAGGGTTCCAACATCAACATATCTCAGATGATAGCGTGCGTGGGCCAGCAGGCGCTGAACGGGAAACGTGTGCCGAACGGCTTCGAAGATCGCTCCTTACCACACTTCGAGAGACACTCAAAAATCCCTGCCGCTCGCGGGTTCGTGGAGAACAGCTTCTATTCAGGGTTGACCCCCACCGAGTTTTTCTTCCACACGATGGGCGGAAGAGAGGGTCTCGTGGACACAGCCGTCAAGACGGCCGAGACAGGATACTTACAGAGAAGACTGGTTAAGTCGTTAGAGGACCTGGTGCTCCACTACGACATGACAGTCCGCAACGCTACCAGCGAGGTGGTTCAGTTCCGCTACGGCAGCGACGGCCTCGACCCCAGCTACATGGAGGGCCGCGACAGACCCGTCGACCTGACGCGCGTACTGCGACACGTGCGGGCCAGCTGTCGCACGCAAGACGAGGAGCCTCTGGACGGTGAGGGCATCGTGGTGGCGGCGGAGGAGACGCTCGCTCTGGACGACTTCAAGACCTGTCCGCCGGAGTTCAAGGCGGAACTGCTTGAGTTCCTGAAGGGCACGGCGGCCAAAGTGCGGTCTCTCCGCGAGCGATACGCGTCAGCCGGTCCCGTGGCCTTACAGCTGGAGCGACTGACCCTCACGCAGCTGGTGCGGTTCATCAGAGTGTGTCACGAGAAGTATCAGAGGAGCATCATCGAACCAGGCACGGCCGTGGGGGCTCTGGCCGCGCAGAGTATCGGCGAGCCGGGCACCCAGATGACATTGAAGACCTTCCACTTCGCAGGCGTCGCCTCCATGAACATAACGCAGGGTGTGCCGCGTGTCAAGGAGATCATTAACGCGTCAAAGAACATATCCACCCCCATCATCACGGCCGAGCTCATGGAGCCCACCGACCAGGAGTTCGCCAGGAGGGTCAAAGGAAGAGTCGAGAAAACTACCCTCGGAGAGATAACGACGTACATAGACGAGGTGTACCTCCCGCACGAGTGTTTCCTGCTGGTGAGGCTGGATGCTGAGAGAATAAGACTGCTGTGTCTCGAGGTGGACGTGCACTCCATCGTGTACTCAATCTGCACGTCGAAGCTGAAGCTGAAGCCGGGGAACGTCCAGGCCGTGTCTGAGTGGGCCATCAAGGTACATGCGGAGGCGAGCAAGCACGGGGGGTGGCTGAACGTGGCGCTGCAGCAGCTCGCCAGGCAGCTGCCCTCCGTGGTCGTGAAAGGACTCAGTAAGGTCTCCCGAGCTGTCATAGCGTGTGACGACACGGGACCCGTTAATAGGTACAAGTTATGCGTGGAGGGGGACGGTCTCCGGGAGGTGATGGCCACGTACGGCATCGACGGCCGACGGACCACCTCCAACAACATCCTGGAGGTGTTCCACACGCTGGGTATAGAGGCAGCGGCCGGCACCATCATGAGCGAGGTGGAGGCGGTCATGGCGGGCCACGGCATGGCGGTGGATGGCCGCCACGTGGCGCTGCTGGCGGCGCAGATGTGTGCGCGGGGGGAGGTGCTGGGGATCACCAGGTACGGACTCGCCCGGATGAAGGAGTCCGTGCTCAATCTGGCCAGTTTTGAGAAGACAGCCGACCATTTGTTTGACGCGGCGTACTACGGCCAGAGGGATCGTATAGAGGGAGTCTCGGAGTGCATCATCCTCGGTGTCCCGGCCGGCATCGGCACTGGAGTGCTGCAGCTGCTGCACAAACATGACCACACGACGTCGCAGCAACAGCACAAGCTGCTGTTCGACGATCCCAAATATCATTGCTCAATATGGGAATAA

Protein sequence:

>DPOGS212816-PA
MPKEQYRETYVGRKISHVTFNVDSATEIQQAAHIQVITKNLYAQDGQRVPASYGVLDRRMGTNQKDANCETCGLGLAECVGHYGYVELALPVFHVGYFRSIITILQTICKAINCAKVMLPDTIKKSFSRKFMHPDLTYLHKKNLRAAVLKKAKTCTKCPYCESLNGIVKKSPAGILKIIHDKYRTKKPTDPAVQKVLKDFNEAKESNKELASMINSGLIIEMSPLEPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRQLVRNGPDVHPGANYVQQRGVSHKKYLKYGNRDKIAQELKCGDTVERHLVDGDVVLFNRQPSLHKLSIMCHRARVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLITQRDSFFTLPEARQLVACLLAGPDSTMRVDMPPPAILKPRMLWTGKQIFSLIMKPNKRCEVKANLETKGKNYTGNQDMCVQDSYVIIRNSELICGSMDKSTLGSGTKNSVFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGNKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCSMEETLEAIMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLHYDMTVRNATSEVVQFRYGSDGLDPSYMEGRDRPVDLTRVLRHVRASCRTQDEEPLDGEGIVVAAEETLALDDFKTCPPEFKAELLEFLKGTAAKVRSLRERYASAGPVALQLERLTLTQLVRFIRVCHEKYQRSIIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASKNISTPIITAELMEPTDQEFARRVKGRVEKTTLGEITTYIDEVYLPHECFLLVRLDAERIRLLCLEVDVHSIVYSICTSKLKLKPGNVQAVSEWAIKVHAEASKHGGWLNVALQQLARQLPSVVVKGLSKVSRAVIACDDTGPVNRYKLCVEGDGLREVMATYGIDGRRTTSNNILEVFHTLGIEAAAGTIMSEVEAVMAGHGMAVDGRHVALLAAQMCARGEVLGITRYGLARMKESVLNLASFEKTADHLFDAAYYGQRDRIEGVSECIILGVPAGIGTGVLQLLHKHDHTTSQQQHKLLFDDPKYHCSIWE-