| DPOGS212856 | ||
|---|---|---|
| Transcript | DPOGS212856-TA | 429 bp |
| Protein | DPOGS212856-PA | 142 aa |
| Genomic position | DPSCF300086 + 289534-290385 | |
| RNAseq coverage | 533x (Rank: top 24%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010117 | 2e-79 | 100.00% | |
| Bombyx | BGIBMGA000800-TA | 2e-79 | 100.00% | |
| Drosophila | AP-2sigma-PA | 2e-78 | 98.59% | |
| EBI UniRef50 | UniRef50_P53680 | 3e-75 | 97.18% | AP-2 complex subunit sigma n=112 Tax=Eukaryota RepID=AP2S1_HUMAN |
| NCBI RefSeq | XP_001600601.1 | 3e-78 | 99.29% | PREDICTED: similar to ENSANGP00000008517 [Nasonia vitripennis] |
| NCBI nr blastp | gi|340727423 | 4e-77 | 99.30% | PREDICTED: AP-2 complex subunit sigma-like [Bombus terrestris] |
| NCBI nr blastx | gi|91087215 | 2e-77 | 100.00% | PREDICTED: similar to clathrin coat assembly protein ap17 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0008565 | 3.6e-126 | protein transporter activity | |
| GO:0015031 | 3.6e-126 | protein transport | ||
| GO:0006810 | 4.6e-47 | transport | ||
| KEGG pathway | nvi:100116036 | 1e-77 | ||
| K11827 (AP2S1) | maps-> | Huntington's disease | ||
| Endocytosis | ||||
| InterPro domain | [1-142] IPR016635 | 3.6e-126 | Adaptor protein complex, sigma subunit | |
| [1-141] IPR022775 | 3.1e-62 | AP complex, mu/sigma subunit | ||
| [1-142] IPR011012 | 4.6e-47 | Longin-like | ||
| Orthology group | MCL15323 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212856-TA
ATGATTCGCTTTATTTTAATTCAAAATCGAGCTGGTAAAACTCGGTTGGCAAAATGGTACATGAATTTTGATGATGATGAGAAACAGAAATTAATAGAAGAAGTTCACGCTGTTGTTACAGTTCGTGACGCCAAACATACCAACTTCGTGGAATTTAGAAACTTCAAGATAGTGTACAGAAGATATGCTGGACTATACTTCTGTATATGTGTGGACGTGAATGACAACAACCTCTGCTATCTTGAAGCTATCCACAATTTTGTTGAAGTGCTCAATGAATACTTCCACAACGTGTGTGAACTCGATCTTGTATTTAACTTCTATAAGGTGTACACAGTGGTGGATGAAATGTTCCTCGCTGGTGAGATCCGGGAGACGTCCCAGACCAAAGTCCTGAAGCAATTGCTGATGCTCAACTCCTTAGAGTGA
>DPOGS212856-PA
MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSLE-