| DPOGS212877 | ||
|---|---|---|
| Transcript | DPOGS212877-TA | 618 bp |
| Protein | DPOGS212877-PA | 205 aa |
| Genomic position | DPSCF300086 + 553283-555968 | |
| RNAseq coverage | 275x (Rank: top 39%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008174 | 3e-95 | 77.56% | |
| Bombyx | BGIBMGA013896-TA | 3e-12 | 33.09% | |
| Drosophila | Rrp46-PA | 6e-39 | 41.29% | |
| EBI UniRef50 | UniRef50_B0XFZ4 | 2e-51 | 47.32% | Exosome complex exonuclease RRP46 n=2 Tax=Culicinae RepID=B0XFZ4_CULQU |
| NCBI RefSeq | XP_001868566.1 | 5e-52 | 47.32% | exosome complex exonuclease RRP46 [Culex quinquefasciatus] |
| NCBI nr blastp | gi|170067650 | 8e-51 | 47.32% | exosome complex exonuclease RRP46 [Culex quinquefasciatus] |
| NCBI nr blastx | gi|322795793 | 7e-48 | 42.23% | hypothetical protein SINV_11798 [Solenopsis invicta] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006396 | 1.1e-10 | RNA processing | |
| GO:0003723 | 1.1e-10 | RNA binding | ||
| KEGG pathway | cqu:CpipJ_CPIJ018157 | 1e-51 | ||
| K12590 (RRP46, EXOSC5) | maps-> | RNA degradation | ||
| InterPro domain | [1-116] IPR001247 | 1.4e-18 | Exoribonuclease, phosphorolytic domain 1 | |
| [1-125] IPR020568 | 1.9e-18 | Ribosomal protein S5 domain 2-type fold | ||
| [114-200] IPR015847 | 1.1e-10 | Exoribonuclease, phosphorolytic domain 2 | ||
| Orthology group | MCL15320 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212877-TA
ATGAAATGTGAACTTAATTTTCTTAGCAGATCTGATGGTTCGGCGATCTTATCTCAAGGTGAAACTGTGGTCACAGTAAGTGTTAATGGTCCATTGGACATCAAGACAACTAGCCAGAGTATAGAGAAGGCGACTCTTGAAATTCTGTTCAGTAGCAAGGGAGGGAAACCGTCAGTTGCTGATCGGTTTAAAGAAAATGTAATCAGACAGACATGTGAAACAGCTATATTGGGTTGCCTGTATCCTCGGACCGGAATAACGATTACAATACAAGAATTAGAAGACTATGGAGGGCTCCTTTCCTGTGCAATCAACTGTGCATGTCTAGCTCTTCTCAACAGTGGTATATCGTTACATCACGTAGTGGCAGCCGTCAGTTGTATTGTGGATGAAACTGGAAATATTGTACTGGAACCTTCATATCAGCAGGTTCAGTCGGCCACAACAAAATTGTACTTTGTGTTTGATAGCAGAGATAAGAATCTCGTTACAGGTTTCACTGAGGGTGCTGTCGGTGAAGACATGTACCTTGAGGCTTTAGAGAAATGCCGTGCAGCCAGTGACCTGGTCTTCGACTTCTATAGGGATGTAGTGAGGAAATACAGTGATGTTATATAA
>DPOGS212877-PA
MKCELNFLSRSDGSAILSQGETVVTVSVNGPLDIKTTSQSIEKATLEILFSSKGGKPSVADRFKENVIRQTCETAILGCLYPRTGITITIQELEDYGGLLSCAINCACLALLNSGISLHHVVAAVSCIVDETGNIVLEPSYQQVQSATTKLYFVFDSRDKNLVTGFTEGAVGEDMYLEALEKCRAASDLVFDFYRDVVRKYSDVI-