Monarch geneset OGS2.0

DPOGS212908
TranscriptDPOGS212908-TA240 bp
ProteinDPOGS212908-PA79 aa
Genomic positionDPSCF300285 - 105246-106125
RNAseq coverage1943x (Rank: top 6%)
Annotation
HeliconiusHMEL0042408e-42100.00% 
BombyxBGIBMGA012045-TA9e-1245.31% 
DrosophilaCG9344-PA9e-3992.41% 
EBI UniRef50UniRef50_P623121e-3389.61%U6 snRNA-associated Sm-like protein LSm6 n=84 Tax=root RepID=LSM6_HUMAN
NCBI RefSeqXP_002430967.11e-3998.73%membrane-associated protein, putative [Pediculus humanus corporis]
NCBI nr blastpgi|2420210653e-3898.73%membrane-associated protein, putative [Pediculus humanus corporis]
NCBI nr blastxgi|2420210654e-3798.73%membrane-associated protein, putative [Pediculus humanus corporis]
Group
KEGG pathwayphu:Phum_PHUM5063404e-39 
 K12625 (LSM6)maps-> RNA degradation
    Spliceosome
InterPro domain[9-74] IPR0066494e-20Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
[7-76] IPR0109207.5e-18Like-Sm ribonucleoprotein (LSM)-related domain
[10-73] IPR0011634.6e-17Like-Sm ribonucleoprotein (LSM) domain
Orthology groupMCL15339 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS212908-TA
ATGAGTCGCAAGGAAGCTCTGTCATCATTTATCCAACAAATTCACGGGCGACCAGTTGTAGTCAAATTAAATAGCGGTGTGGATTATCGAGGAGTTCTTGCTTGTTTGGACGGCTATATGAACATAGCTTTAGAACAGACTGAAGAATATGTAAATGGACAACTCAAAAATAAATACGGAGATGCATTTATAAGAGGCAACAATGTTTTATATATAAGTACACAGAAACGCAGAATATAA

Protein sequence:

>DPOGS212908-PA
MSRKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI-