DPOGS212908 | ||
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Transcript | DPOGS212908-TA | 240 bp |
Protein | DPOGS212908-PA | 79 aa |
Genomic position | DPSCF300285 - 105246-106125 | |
RNAseq coverage | 1943x (Rank: top 6%) |
Annotation | ||||
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Heliconius | HMEL004240 | 8e-42 | 100.00% |   |
Bombyx | BGIBMGA012045-TA | 9e-12 | 45.31% |   |
Drosophila | CG9344-PA | 9e-39 | 92.41% |   |
EBI UniRef50 | UniRef50_P62312 | 1e-33 | 89.61% | U6 snRNA-associated Sm-like protein LSm6 n=84 Tax=root RepID=LSM6_HUMAN |
NCBI RefSeq | XP_002430967.1 | 1e-39 | 98.73% | membrane-associated protein, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242021065 | 3e-38 | 98.73% | membrane-associated protein, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|242021065 | 4e-37 | 98.73% | membrane-associated protein, putative [Pediculus humanus corporis] |
Group | ||||
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KEGG pathway | phu:Phum_PHUM506340 | 4e-39 |   | |
  | K12625 (LSM6) | maps-> | RNA degradation | |
  |   |   | Spliceosome | |
InterPro domain | [9-74] IPR006649 | 4e-20 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | |
[7-76] IPR010920 | 7.5e-18 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
[10-73] IPR001163 | 4.6e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL15339 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212908-TA
ATGAGTCGCAAGGAAGCTCTGTCATCATTTATCCAACAAATTCACGGGCGACCAGTTGTAGTCAAATTAAATAGCGGTGTGGATTATCGAGGAGTTCTTGCTTGTTTGGACGGCTATATGAACATAGCTTTAGAACAGACTGAAGAATATGTAAATGGACAACTCAAAAATAAATACGGAGATGCATTTATAAGAGGCAACAATGTTTTATATATAAGTACACAGAAACGCAGAATATAA
>DPOGS212908-PA
MSRKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI-