| DPOGS213213 | ||
|---|---|---|
| Transcript | DPOGS213213-TA | 840 bp |
| Protein | DPOGS213213-PA | 279 aa |
| Genomic position | DPSCF300114 + 337525-340294 | |
| RNAseq coverage | 1717x (Rank: top 7%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL002989 | 3e-144 | 85.30% | |
| Bombyx | BGIBMGA007360-TA | 3e-109 | 66.19% | |
| Drosophila | CG4389-PA | 7e-36 | 34.16% | |
| EBI UniRef50 | UniRef50_E0VKS4 | 6e-106 | 62.45% | Short chain 3-hydroxyacyl-CoA dehydrogenase, putative n=10 Tax=Opisthokonta RepID=E0VKS4_PEDHC |
| NCBI RefSeq | XP_973042.1 | 1e-116 | 71.22% | PREDICTED: similar to 3-hydroxyacyl-coa dehyrogenase [Tribolium castaneum] |
| NCBI nr blastp | gi|379698894 | 3e-136 | 82.08% | 3-hydroxyacyl-CoA dehydrogenase [Bombyx mori] |
| NCBI nr blastx | gi|379698894 | 2e-130 | 82.08% | 3-hydroxyacyl-CoA dehydrogenase [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006631 | 1.9e-56 | fatty acid metabolic process | |
| GO:0003857 | 1.9e-56 | 3-hydroxyacyl-CoA dehydrogenase activity | ||
| GO:0055114 | 1.9e-56 | oxidation-reduction process | ||
| GO:0016491 | 1.9e-56 | oxidoreductase activity | ||
| GO:0005488 | 7.2e-53 | binding | ||
| GO:0016616 | 1.8e-36 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ||
| GO:0050662 | 1.8e-36 | coenzyme binding | ||
| KEGG pathway | tca:661810 | 4e-116 | ||
| K00022 (HADH) | maps-> | Fatty acid elongation in mitochondria | ||
| Tryptophan metabolism | ||||
| Lysine degradation | ||||
| Valine, leucine and isoleucine degradation | ||||
| Geraniol degradation | ||||
| Fatty acid metabolism | ||||
| Caprolactam degradation | ||||
| Butanoate metabolism | ||||
| InterPro domain | [1-177] IPR006176 | 1.9e-56 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | |
| [1-180] IPR016040 | 7.2e-53 | NAD(P)-binding domain | ||
| [181-277] IPR013328 | 1.8e-36 | Dehydrogenase, multihelical | ||
| [179-276] IPR006108 | 3.6e-35 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | ||
| [179-277] IPR008927 | 5.1e-35 | 6-phosphogluconate dehydrogenase, C-terminal-like | ||
| Orthology group | MCL17816 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS213213-TA
ATGGGTTCGGGAATTGCTCAGGTAGCAGCACAAGCTGGTCAAAATGTGACCTTAGTGGACGTTAGCTCTGATGTGTTAGCTAAATCTCAAAAATCAATAGCCACCAATCTGAATAGAGTCGCTAAGAAGATTTATAAAGACAAACCTCAGGATGGTGAGAAGTTTGTTGCTGAGGCTATTGCTAGAATAAAAACCAACACAGATCCTGCAGCAGCCAGCCAAGAAGCTGATTTGATTGTGGAGGCAATCGTTGAAAACATGGATGTAAAACACCAATTGTTCAAAAAGCTTGATGCGGCGGCTCCTGGTCATACCATCTTTGCCTCGAACACATCCTCCCTCTCTATCAATGAGATCTCTTCAGTTGTTAAGAGGACAGACAAATTTGGTGGTCTACACTTCTTCAATCCCGTGCCGGTGATGCGTCTACTTGAAGTGGTCCGTGGTGAGAAAACATCTGACAACACTTACAAGGCCATGATGGAATGGGGCAAGACTGTGGGCAAGACCTGCATAACTTGCAAAGATACTCCTGGATTTGTTGTCAACAGGCTTCTGGTTCCGTATATTGCAGAGGCAATTCGGTTGTTTGAGAGAGGTGATGCTTCAGCTCGGGACATTGATGTGGCCATGAAGTTAGGTGCTGGTTATCCGATGGGACCGCTGGAGTTAGCTGACTATGTAGGTCTGGACACTAACAAGTTTATCTTAGACGGCTGGCATAAAAAATACCCCGAAGAACCCTTATTCAAACCCAGCCCTCTCCTTAATAAACTGGTGTCGGAAGGGAAGCTTGGAGTCAAGAGCGGAGAAGGCTTCTACAAGTATGAAAAGAAATGA
>DPOGS213213-PA
MGSGIAQVAAQAGQNVTLVDVSSDVLAKSQKSIATNLNRVAKKIYKDKPQDGEKFVAEAIARIKTNTDPAAASQEADLIVEAIVENMDVKHQLFKKLDAAAPGHTIFASNTSSLSINEISSVVKRTDKFGGLHFFNPVPVMRLLEVVRGEKTSDNTYKAMMEWGKTVGKTCITCKDTPGFVVNRLLVPYIAEAIRLFERGDASARDIDVAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKYPEEPLFKPSPLLNKLVSEGKLGVKSGEGFYKYEKK-