DPOGS213213 | ||
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Transcript | DPOGS213213-TA | 840 bp |
Protein | DPOGS213213-PA | 279 aa |
Genomic position | DPSCF300114 + 337525-340294 | |
RNAseq coverage | 1717x (Rank: top 7%) |
Annotation | ||||
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Heliconius | HMEL002989 | 3e-144 | 85.30% |   |
Bombyx | BGIBMGA007360-TA | 3e-109 | 66.19% |   |
Drosophila | CG4389-PA | 7e-36 | 34.16% |   |
EBI UniRef50 | UniRef50_E0VKS4 | 6e-106 | 62.45% | Short chain 3-hydroxyacyl-CoA dehydrogenase, putative n=10 Tax=Opisthokonta RepID=E0VKS4_PEDHC |
NCBI RefSeq | XP_973042.1 | 1e-116 | 71.22% | PREDICTED: similar to 3-hydroxyacyl-coa dehyrogenase [Tribolium castaneum] |
NCBI nr blastp | gi|379698894 | 3e-136 | 82.08% | 3-hydroxyacyl-CoA dehydrogenase [Bombyx mori] |
NCBI nr blastx | gi|379698894 | 2e-130 | 82.08% | 3-hydroxyacyl-CoA dehydrogenase [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0006631 | 1.9e-56 | fatty acid metabolic process | |
GO:0003857 | 1.9e-56 | 3-hydroxyacyl-CoA dehydrogenase activity | ||
GO:0055114 | 1.9e-56 | oxidation-reduction process | ||
GO:0016491 | 1.9e-56 | oxidoreductase activity | ||
GO:0005488 | 7.2e-53 | binding | ||
GO:0016616 | 1.8e-36 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ||
GO:0050662 | 1.8e-36 | coenzyme binding | ||
KEGG pathway | tca:661810 | 4e-116 |   | |
  | K00022 (HADH) | maps-> | Fatty acid elongation in mitochondria | |
  |   |   | Tryptophan metabolism | |
  |   |   | Lysine degradation | |
  |   |   | Valine, leucine and isoleucine degradation | |
  |   |   | Geraniol degradation | |
  |   |   | Fatty acid metabolism | |
  |   |   | Caprolactam degradation | |
  |   |   | Butanoate metabolism | |
InterPro domain | [1-177] IPR006176 | 1.9e-56 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | |
[1-180] IPR016040 | 7.2e-53 | NAD(P)-binding domain | ||
[181-277] IPR013328 | 1.8e-36 | Dehydrogenase, multihelical | ||
[179-276] IPR006108 | 3.6e-35 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | ||
[179-277] IPR008927 | 5.1e-35 | 6-phosphogluconate dehydrogenase, C-terminal-like | ||
Orthology group | MCL17816 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS213213-TA
ATGGGTTCGGGAATTGCTCAGGTAGCAGCACAAGCTGGTCAAAATGTGACCTTAGTGGACGTTAGCTCTGATGTGTTAGCTAAATCTCAAAAATCAATAGCCACCAATCTGAATAGAGTCGCTAAGAAGATTTATAAAGACAAACCTCAGGATGGTGAGAAGTTTGTTGCTGAGGCTATTGCTAGAATAAAAACCAACACAGATCCTGCAGCAGCCAGCCAAGAAGCTGATTTGATTGTGGAGGCAATCGTTGAAAACATGGATGTAAAACACCAATTGTTCAAAAAGCTTGATGCGGCGGCTCCTGGTCATACCATCTTTGCCTCGAACACATCCTCCCTCTCTATCAATGAGATCTCTTCAGTTGTTAAGAGGACAGACAAATTTGGTGGTCTACACTTCTTCAATCCCGTGCCGGTGATGCGTCTACTTGAAGTGGTCCGTGGTGAGAAAACATCTGACAACACTTACAAGGCCATGATGGAATGGGGCAAGACTGTGGGCAAGACCTGCATAACTTGCAAAGATACTCCTGGATTTGTTGTCAACAGGCTTCTGGTTCCGTATATTGCAGAGGCAATTCGGTTGTTTGAGAGAGGTGATGCTTCAGCTCGGGACATTGATGTGGCCATGAAGTTAGGTGCTGGTTATCCGATGGGACCGCTGGAGTTAGCTGACTATGTAGGTCTGGACACTAACAAGTTTATCTTAGACGGCTGGCATAAAAAATACCCCGAAGAACCCTTATTCAAACCCAGCCCTCTCCTTAATAAACTGGTGTCGGAAGGGAAGCTTGGAGTCAAGAGCGGAGAAGGCTTCTACAAGTATGAAAAGAAATGA
>DPOGS213213-PA
MGSGIAQVAAQAGQNVTLVDVSSDVLAKSQKSIATNLNRVAKKIYKDKPQDGEKFVAEAIARIKTNTDPAAASQEADLIVEAIVENMDVKHQLFKKLDAAAPGHTIFASNTSSLSINEISSVVKRTDKFGGLHFFNPVPVMRLLEVVRGEKTSDNTYKAMMEWGKTVGKTCITCKDTPGFVVNRLLVPYIAEAIRLFERGDASARDIDVAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKYPEEPLFKPSPLLNKLVSEGKLGVKSGEGFYKYEKK-