| DPOGS213312 | ||
|---|---|---|
| Transcript | DPOGS213312-TA | 270 bp |
| Protein | DPOGS213312-PA | 89 aa |
| Genomic position | DPSCF302517 - 64-333 | |
| RNAseq coverage | 250x (Rank: top 42%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010299 | 4e-41 | 95.06% | |
| Bombyx | BGIBMGA007399-TA | 8e-39 | 88.89% | |
| Drosophila | CG3436-PA | 1e-23 | 54.32% | |
| EBI UniRef50 | UniRef50_B4DQJ1 | 2e-24 | 59.26% | Small nuclear ribonucleoprotein 40kDa (U5) n=79 Tax=Eukaryota RepID=B4DQJ1_HUMAN |
| NCBI RefSeq | XP_968017.1 | 8e-29 | 71.60% | PREDICTED: similar to AGAP009506-PA [Tribolium castaneum] |
| NCBI nr blastp | gi|312385050 | 1e-27 | 70.37% | hypothetical protein AND_01234 [Anopheles darlingi] |
| NCBI nr blastx | gi|312385050 | 1e-27 | 70.37% | hypothetical protein AND_01234 [Anopheles darlingi] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005515 | 1.5e-18 | protein binding | |
| KEGG pathway | tca:656388 | 2e-28 | ||
| K12857 (SNRNP40, PRP8BP) | maps-> | Spliceosome | ||
| InterPro domain | [6-80] IPR015943 | 1.5e-18 | WD40/YVTN repeat-like-containing domain | |
| [4-81] IPR011046 | 1e-16 | WD40 repeat-like-containing domain | ||
| [30-62] IPR019781 | 7e-06 | WD40 repeat, subgroup | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS213312-TA
GCAAGAAGGGGTCCAGAGCTTTTGGTTTCGGCATCAGACGACAGCACCATAAAACTTTGGGATGCCAGAAAACGTAACCCCATAGCCTCGTTTGACAGTGAATACCCCGTCACGGCGGTGTTGTTCAATGACACGGCAGAGAAAATCATATCAGGGGGCATAGACAATGTTATCAAAGTATGGGACATCCGGAATAATCAGATATCATACAAAATTAAAGGACACACCGACACCGTCACGGGTAATCGGAACTTCTATTCTGCTTTCTGA
>DPOGS213312-PA
ARRGPELLVSASDDSTIKLWDARKRNPIASFDSEYPVTAVLFNDTAEKIISGGIDNVIKVWDIRNNQISYKIKGHTDTVTGNRNFYSAF-