DPOGS213476 | ||
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Transcript | DPOGS213476-TA | 441 bp |
Protein | DPOGS213476-PA | 146 aa |
Genomic position | DPSCF300100 - 45917-47736 | |
RNAseq coverage | 1859x (Rank: top 7%) |
Annotation | ||||
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Heliconius | HMEL016860 | 2e-57 | 87.20% |   |
Bombyx | BGIBMGA004501-TA | 1e-62 | 85.93% |   |
Drosophila | Elongin-C-PA | 7e-60 | 94.44% |   |
EBI UniRef50 | UniRef50_Q15369 | 5e-58 | 96.33% | Transcription elongation factor B polypeptide 1 n=158 Tax=root RepID=ELOC_HUMAN |
NCBI RefSeq | NP_001040412.1 | 3e-61 | 85.93% | transcription elongation factor B polypeptide 1 [Bombyx mori] |
NCBI nr blastp | gi|114050873 | 6e-60 | 85.93% | transcription elongation factor B polypeptide 1 [Bombyx mori] |
NCBI nr blastx | gi|114050873 | 1e-60 | 88.97% | transcription elongation factor B polypeptide 1 [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0006511 | 2.8e-35 | ubiquitin-dependent protein catabolic process | |
KEGG pathway | tca:664284 | 7e-60 |   | |
  | K03872 (TCEB1) | maps-> | Pathways in cancer | |
  |   |   | Ubiquitin mediated proteolysis | |
  |   |   | Renal cell carcinoma | |
InterPro domain | [51-146] IPR011333 | 1.5e-39 | BTB/POZ fold | |
[50-146] IPR001232 | 2.8e-35 | SKP1 component | ||
[51-112] IPR016073 | 2.4e-22 | SKP1 component, POZ | ||
Orthology group | MCL14943 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS213476-TA
ATGTCTGAACAGAATGTTGGGTCGGTGCCTGCTTCAGCGGCTTCATCTGGCACCAACGTGGCCGAAGAACAACGGTCACCGAGCACTGCCGCCGGCTCCGGAAGTGTATCTGAAGAGAAGGTGTACGGCGGGTGCGAGGGTCCGGACGCTATGTACGTCAAACTGGTCTCCTCGGACGGCCACGAGTTCATCGTGAAGAGAGAACACGCGCTCACCTCGGGAACTATAAAGGCCATGCTGAGCGGACCGGGACAGTTCGCCGAGAACGAGGCCAATGAGGTCAACTTCAGAGAAATACCCTCCCACGTGCTGCAGAAGGTGTGTATGTATTTCACGTACAAGGTGCGCTACACAAATTCTTCTACAGAAATACCGGAATTCCCCATCGCACCGGAAATAGCCCTCGAGCTGCTCATGGCCGCCAACTTCCTGGACTGTTAA
>DPOGS213476-PA
MSEQNVGSVPASAASSGTNVAEEQRSPSTAAGSGSVSEEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALTSGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC-