| DPOGS213839 | ||
|---|---|---|
| Transcript | DPOGS213839-TA | 543 bp |
| Protein | DPOGS213839-PA | 180 aa |
| Genomic position | DPSCF300183 + 152278-153045 | |
| RNAseq coverage | 2543x (Rank: top 5%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014193 | 1e-74 | 69.44% | |
| Bombyx | BGIBMGA011593-TA | 9e-75 | 70.72% | |
| Drosophila | SdhC-PA | 9e-36 | 60.29% | |
| EBI UniRef50 | UniRef50_Q7QE37 | 5e-39 | 60.31% | AGAP010672-PA n=6 Tax=Diptera RepID=Q7QE37_ANOGA |
| NCBI RefSeq | XP_311387.3 | 1e-39 | 60.31% | AGAP010672-PA [Anopheles gambiae str. PEST] |
| NCBI nr blastp | gi|312375419 | 7e-39 | 60.61% | hypothetical protein AND_14194 [Anopheles darlingi] |
| NCBI nr blastx | gi|118781278 | 3e-38 | 60.31% | AGAP010672-PA [Anopheles gambiae str. PEST] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006099 | 1e-22 | tricarboxylic acid cycle | |
| GO:0000104 | 1e-22 | succinate dehydrogenase activity | ||
| GO:0045282 | 1e-22 | plasma membrane succinate dehydrogenase complex | ||
| GO:0016627 | 1.7e-21 | oxidoreductase activity, acting on the CH-CH group of donors | ||
| KEGG pathway | aga:AgaP_AGAP010672 | 3e-39 | ||
| K00236 (SDHC, SDH3) | maps-> | Huntington's disease | ||
| Citrate cycle (TCA cycle) | ||||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [18-181] IPR014361 | 9.1e-40 | Succinate dehydrogenase, cytochrome b560 subunit | |
| [60-178] IPR014314 | 1e-22 | Succinate dehydrogenase, cytochrome b556 subunit | ||
| [58-177] IPR000701 | 1.7e-21 | Succinate dehydrogenase/Fumarate reductase, transmembrane subunit | ||
| Orthology group | MCL12252 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS213839-TA
ATGGCATTCTATTGCTGTAGCAGACTAGGAACGAAATCGGTGTTTGGAAACTTGGCAAAGTATAGATCTGCTTTGGGCACAGTATCATATGCTCAATCTGCTGCAGTTCCCAAGATAACCTTCAAAAATTTCGAACCACCAAAGGAAGAACATCATGACATTAAGAACGAACGCCTCAAAAGACCTCTTTCACCTCACCTTACCATAATCGAGTATCAGCTGACAAGCATTTTATCAATTTCCCATAGATTTGCGGGAATGATTCTGTCTGGATATGCTACAGCTTTAGGTGTTGGGGCCTTAGTGTTGCCGAATGATATTTCTCACTATATAACTATGATTGAGGGACTCAATTTGTCCCCGGCCACATTGTTTATTGCTAAAGTATTGATAGCAGCTCCATTTGGTTATCATTTTGCTAACGGAATTCGGCATCTGTACTGGGATACCGCTAAAGGTTTGTCTATTAAAGAAGTTTATTCAACCGGATACACGATGTTGGCCGGAGCAGCGGTACTTACATTGATTTTAGCTGCGTTGTAA
>DPOGS213839-PA
MAFYCCSRLGTKSVFGNLAKYRSALGTVSYAQSAAVPKITFKNFEPPKEEHHDIKNERLKRPLSPHLTIIEYQLTSILSISHRFAGMILSGYATALGVGALVLPNDISHYITMIEGLNLSPATLFIAKVLIAAPFGYHFANGIRHLYWDTAKGLSIKEVYSTGYTMLAGAAVLTLILAAL-