DPOGS213891 | ||
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Transcript | DPOGS213891-TA | 2586 bp |
Protein | DPOGS213891-PA | 861 aa |
Genomic position | DPSCF300572 - 8440-11296 | |
RNAseq coverage | 833x (Rank: top 15%) |
Annotation | ||||
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Heliconius | HMEL016133 | 0.0 | 90.66% |   |
Bombyx | BGIBMGA003229-TA | 0.0 | 78.55% |   |
Drosophila | Hmgcr-PB | 0.0 | 50.54% |   |
EBI UniRef50 | UniRef50_O76819 | 0.0 | 87.57% | 3-hydroxy-3-methylglutaryl-coenzyme A reductase n=5 Tax=Obtectomera RepID=HMDH_AGRIP |
NCBI RefSeq | NP_001093298.1 | 0.0 | 85.82% | 3-hydroxy-3-methylglutaryl-CoA reductase [Bombyx mori] |
NCBI nr blastp | gi|11132855 | 0.0 | 87.57% | 3-hydroxy-3-methylgluraryl coenzyme A reductase [Agrotis ipsilon] |
NCBI nr blastx | gi|11132855 | 0.0 | 87.57% | 3-hydroxy-3-methylgluraryl coenzyme A reductase [Agrotis ipsilon] |
Group | ||||
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Gene Ontology | GO:0015936 | 8.1e-151 | coenzyme A metabolic process | |
GO:0004420 | 8.1e-151 | hydroxymethylglutaryl-CoA reductase (NADPH) activity | ||
GO:0055114 | 8.1e-151 | oxidation-reduction process | ||
GO:0050662 | 8.1e-151 | coenzyme binding | ||
GO:0050661 | 4.3e-140 | NADP binding | ||
GO:0008299 | 4.3e-140 | isoprenoid biosynthetic process | ||
GO:0016021 | 4.3e-140 | integral to membrane | ||
GO:0016616 | 5.9e-100 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ||
KEGG pathway | dan:Dana_GF16258 | 0.0 |   | |
  | K00021 (E1.1.1.34, HMG1) | maps-> | Terpenoid backbone biosynthesis | |
InterPro domain | [34-850] IPR002202 | 0 | Hydroxymethylglutaryl-CoA reductase, class I/II | |
[438-844] IPR004554 | 4.3e-140 | Hydroxymethylglutaryl-CoA reductase, eukaryotic/arcaheal type | ||
[416-834] IPR009029 | 5.9e-100 | Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding | ||
[677-846] IPR023074 | 4.5e-84 | Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain | ||
[561-676] IPR009023 | 1.5e-49 | Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding | ||
[427-511] IPR023282 | 7.9e-26 | Hydroxymethylglutaryl-CoA reductase, N-terminal | ||
Orthology group | MCL12272 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS213891-TA
ATGTTGTTCGACCTCTGCCCTAAGATTGTTTTGAAAATATCACCCGCTGTAATACACAGGCTGCACAGCGGCACAGTATCTATGATGAAGGTCTGGGGAGCGCACGGGGAGTTCTGTGCGAAACATCAATGGGAGGTCATAGTGGCGACCCTCGCCCTCCTCGCCTGTGCTGCGAGTGTCGAGAGACACGGCACAGGCGTCAGATCTGAACACTGTGCGGGCTGGGCTAGAGCGTGTCCAGGGTTAGAGGCGGAGTATCAAGCGGCCGACGCTGTTATCATGACCTTCGTCCGCTGCGCCGCCTTGCTCTACGCCTATTACCAAGTGTCGAATCTTCAGAAAATTGCTTCGAAATATCTTCTAATAATTGCTGGCGTGTTCTCAACATTCGCCAGTTTCATATTCACGTCGGCATTGGCTAGTTTGTTTTGGAGCGAGCTGGCGAGTATTAAGGATGCGCCGTTTCTGTTCCTATTGGTTGCTGATGTGGCTAGAGGGGCCAGGATGGCTAAGGCTGGATGGAGCGCAGGAGAGGATCAGGGGAAGAGGGTCGGCAAAGCGCTTTCATTGCTGGGACCGACGGCGACTTTAGACACACTTCTAGCAGTTCTTCTAGTCGGTGTCGGTGGACTATCTGGTGTTCCAAGATTGGAGCACATGTGCACGTTCGCTTGTCTGGCTCTGTTAGTCGACTACTCCGTGTTCGTTACTTTCTACCCGGCCTGCTTATCGCTCGTGTCAGATTTCGCATCCGGCAGGAAAGAAATGAGACCGGATAGTCCGTTTGCTGAAAGTGATCTGAAACCTAACCCGGTGGTGCAGAGGGTCAAGATGATCATGGCTGCTGGTTTGTTGTGTGTACATCTGACAAGCAGGTTGCCGTGGGCGAAGGAGAACGGGATGATAGAAGGTTCCTTATCAAAAGATTTCAAGTCGACATCCGATGAGAATGTTTTATTCAATTCGTACGTCAAATGGTTCTCAGTGAGCGCCGATTATATCGTCATCGCCACGTTGTTGTGCGCTCTCATTATAAAATTCATCTTCTTCGAGGAGCAAAGGAACTGGGTCATCGATATGAATGATCTAACGGTGAAGGAAGTCACTAATAAATATGACAAGCCTAAATTCATTGTTGGCGAGGAATTTAAAGCGGAGATATGTACTCAAACCGATGACCTGTTGAATTGGGAGGAGACCGAATGGCCAGTGCTCTCCCCGAGCTCATCAGCCGCTAAACTTAACGCGAAAAAACGCCCAATGGCCGAATGTTTGGAAATATACCGTTCAGAGGGTGTCTGTACATCGCTTAGTGACGATGAAGTCGTAATGCTTGTGGAACAATCGCATATACCGTTGCATAGATTAGAGAATGTTCTCAACGATCCATTGCGCGGTGTCAGGCTACGCAGGAGAGTCATATCGGCGAGATTCGAAACGGAATCTGCCGTGAAGAAGCTGCCTTATCTCAACTACGACTATAGCAAAGTACTAAATGCGTGTTGCGAAAACGTGATTGGATATGTTGGTATTCCAGTAGGTTATGCTGGTCCCTTGGTCGTCGATGGTAAAGCTTATATGATCCCCATGGCGACCACTGAAGGGGCTTTGGTAGCATCCACGAATAGAGGCGCTAAGGCAATTGGAACCAGAGGAGTTACCAGTGTGGTTGAAGATGTGGGCATGACAAGAGCTCCAGCGGTGAAGTTACCTAATGTAGTGCGAGCTCACGAGTGCCGTCAGTGGCTCGACAATAAAGATAATTACGCTATTATCAAAACGGCTTTCGATTCAACATCTAGATTCGCGCGACTCCAGGAAGTGCACGTTGGCGTCGACGGCGCCATTTTATATTTGCGATTTAGAGCCACCACTGGCGACGCCATGGGAATGAACATGGTGTCTAAGGGTGCCGAAAACGCTCTCAAGCTACTCAAGAATTACTTCCCGGACATGGAAGTTATAAGTTTATCTGGCAATTACTGTTCTGATAAAAAAGCGGCTTCAATCAACTGGGTCAAAGGTAGAGGCAAACGTGTAATATGCGAGACGACAATATCGGCTACAAATTTGAAGAATATTTTCAAAACTGACGCCAAAACTATGACAAGGTGCAACAAAATAAAGAATTTGTCCGGATCGGCGTTGGCTGGTTCGATAGGAGGCAACAACGCTCACGCTGCTAACATGGTCACCGCTATCTTCATAGCTACCGGCCAAGATCCAGCTCAGAATGTGACGAGCAGCAACTGCTCCACCAGCATGGAGGTTTGTGGGGAGAACAACGAGGATCTGTATGTGACATGCACCATGCCTTCGTTGGAAGTAGGAACTGTTGGCGGCGGCACGGTTCTGACTGGTCAGGGTGCCTGCCTCGAGATCCTCGGCGTCAAAGGAGCGGCGGAACGACCGGCTGAGAACTCAGCCAGACTGGCTTCCCTAATATGCGCCACCGTCCTGGCCGGCGAGCTCAGCCTTATGGCCGCTTTAGTCAACTCGGACTTAGTGAAATCTCACATGCGGCACAACAGATCCACTATCAACGTACAGAACGCGTCCAACGAACTGAAAGTACCCACATTATAA
>DPOGS213891-PA
MLFDLCPKIVLKISPAVIHRLHSGTVSMMKVWGAHGEFCAKHQWEVIVATLALLACAASVERHGTGVRSEHCAGWARACPGLEAEYQAADAVIMTFVRCAALLYAYYQVSNLQKIASKYLLIIAGVFSTFASFIFTSALASLFWSELASIKDAPFLFLLVADVARGARMAKAGWSAGEDQGKRVGKALSLLGPTATLDTLLAVLLVGVGGLSGVPRLEHMCTFACLALLVDYSVFVTFYPACLSLVSDFASGRKEMRPDSPFAESDLKPNPVVQRVKMIMAAGLLCVHLTSRLPWAKENGMIEGSLSKDFKSTSDENVLFNSYVKWFSVSADYIVIATLLCALIIKFIFFEEQRNWVIDMNDLTVKEVTNKYDKPKFIVGEEFKAEICTQTDDLLNWEETEWPVLSPSSSAAKLNAKKRPMAECLEIYRSEGVCTSLSDDEVVMLVEQSHIPLHRLENVLNDPLRGVRLRRRVISARFETESAVKKLPYLNYDYSKVLNACCENVIGYVGIPVGYAGPLVVDGKAYMIPMATTEGALVASTNRGAKAIGTRGVTSVVEDVGMTRAPAVKLPNVVRAHECRQWLDNKDNYAIIKTAFDSTSRFARLQEVHVGVDGAILYLRFRATTGDAMGMNMVSKGAENALKLLKNYFPDMEVISLSGNYCSDKKAASINWVKGRGKRVICETTISATNLKNIFKTDAKTMTRCNKIKNLSGSALAGSIGGNNAHAANMVTAIFIATGQDPAQNVTSSNCSTSMEVCGENNEDLYVTCTMPSLEVGTVGGGTVLTGQGACLEILGVKGAAERPAENSARLASLICATVLAGELSLMAALVNSDLVKSHMRHNRSTINVQNASNELKVPTL-