Monarch geneset OGS2.0

DPOGS213916
TranscriptDPOGS213916-TA1569 bp
ProteinDPOGS213916-PA522 aa
Genomic positionDPSCF300218 + 65524-86668
RNAseq coverage33x (Rank: top 75%)
Annotation
HeliconiusHMEL0155636e-15483.85% 
BombyxBGIBMGA004624-TA1e-17895.19% 
Drosophilaort-PA3e-14987.59% 
EBI UniRef50UniRef50_E2ACX91e-15489.04%Laminin subunit beta-1 n=26 Tax=Pancrustacea RepID=E2ACX9_CAMFO
NCBI RefSeqNP_001071279.13e-15489.38%histamine-gated chloride channel 1 [Apis mellifera]
NCBI nr blastpgi|3071809014e-15489.04%Laminin subunit beta-1 [Camponotus floridanus]
NCBI nr blastxgi|3071809015e-15287.17%Laminin subunit beta-1 [Camponotus floridanus]
Group
Gene OntologyGO:00160217.2e-213integral to membrane
GO:00068117.2e-213ion transport
GO:00160201.7e-45membrane
GO:00068101.7e-45transport
GO:00052301.7e-45extracellular ligand-gated ion channel activity
KEGG pathwaymdo:1000184759e-61 
 K05195 (GLRA3)maps-> Neuroactive ligand-receptor interaction
InterPro domain[8-516] IPR0062017.2e-213Neurotransmitter-gated ion-channel
[31-240] IPR0062021.7e-45Neurotransmitter-gated ion-channel ligand-binding
[384-519] IPR0060291.9e-36Neurotransmitter-gated ion-channel transmembrane domain
[387-407] IPR0060281.4e-32Gamma-aminobutyric acid A receptor
Orthology groupMCL15777 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS213916-TA
ATGGCGGCTGAGAAATTATTATGGCTGACAATGATTTTAATTCGTTTGTGGTTTGGAGCTGGGGATCTCTGTTACGCACAGTCAACGCTGGTGGCCTTCCAAGATCTCCTGCCTGATGATCCTCGTCTTTACGACAAGATGAGGCCTCCGAAGAAAGACGATCAGCCCACTATAGTCAACTTCCACGTGACAGTCATGGGGCTGGACTCCATCGATGAGAACTCAATGACTTACGCCGCAGACATATTTTTCGCTCAAACGTGGAAAGACTTCCGGCTCAGGCTGCCGGAGAATATGACAACAGAATACAGATTACTAGAAGTCGACTGGCTGAAACAGATGTGGCGTCCGGATTCGTTTTTCAAGAACGCTAAATCAGTGACCTTCCAAACGATGACCATACCTAACCACTATGTGTGGTTATACAAGGACAAGACCATACTTTACATGGTGAAGTTGACTCTGAAGTTGAGCTGTGCCATGAATTTCCTCATCTACCCTCACGACACCCAAGAGTGCAAGCTGCAAATGGAAAGCTTGTCTCACACGACAGATGACCTGATCTTCCAGTGGGATCCTGAGGTACCTTTGGTGGTAGACGAGAACATCGAACTTCCACAGTTGGAGCTGGTCCAGAACAGAACCGCAGACTGCACCCAGGTTTATTCCACTGGTAATTTCACATGTCTGGAGGTGATCTTCAAACTGAAGCGTCGTCTTGGATACCACCTGTTCAACACCTACATACCCACCTGCCTTATTGTTATTATGTCGTGGGTGTCGTTCTGGATCAAGCCTGACGCGGCGCCAGCACGTGTCACGCTGGGTGTGACGTCACTCCTCACTCTGTCCACCCAGCACGCCAAATCCCAAGCACAGCTGCCTCCTGTGTCCTATCTTAAGGCTGTGGATGCTTTTATGTCGGTATGCACTGTGTGCTCGATCGACAAACATTTTAAAGCTCTTAAGGTGTCTCACACGACAGATGACCTGATCTTCCAGTGGGATCCTGAGGTACCTTTGGTGGTAGACGAGAACATCGAACTTCCACAGTTGGAGCTGGTCCAGAACAGAACCGCAGACTGCACCCAGGTTTATTCCACTGGTAATTTCACATGTCTGGAGGTGATCTTCAAACTGAAGCGTCGTCTTGGATACCACCTGTTCAACACCTACATACCCACCTGCCTTATTGTTATTATGTCGTGGGTGTCGTTCTGGATCAAGCCTGACGCGGCGCCAGCACGTGTCACGCTGGGTGTGACGTCACTCCTCACTCTGTCCACCCAGCACGCCAAATCCCAAGCACAGCTGCCTCCTGTGTCCTATCTTAAGGCTGTGGATGCTTTTATGTCGGTATGCACTGTCTTCGTGTTCATGGCGCTCATGGAGTACTGCCTCGTCAACATCATCCTTGATGATAGAGGCGGTAAACCTAAGGAACCAGCTGAAGCCGCTAAGGCGCGAATGAGAGCGGTCAGCATCGACCGATTTTCGAGAGTCTTCTTCCCACTTCTCTTCGCAGTGTTGAATGCAACATATTGGATACAGTTCGCGCAATACATCTGA

Protein sequence:

>DPOGS213916-PA
MAAEKLLWLTMILIRLWFGAGDLCYAQSTLVAFQDLLPDDPRLYDKMRPPKKDDQPTIVNFHVTVMGLDSIDENSMTYAADIFFAQTWKDFRLRLPENMTTEYRLLEVDWLKQMWRPDSFFKNAKSVTFQTMTIPNHYVWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDDLIFQWDPEVPLVVDENIELPQLELVQNRTADCTQVYSTGNFTCLEVIFKLKRRLGYHLFNTYIPTCLIVIMSWVSFWIKPDAAPARVTLGVTSLLTLSTQHAKSQAQLPPVSYLKAVDAFMSVCTVCSIDKHFKALKVSHTTDDLIFQWDPEVPLVVDENIELPQLELVQNRTADCTQVYSTGNFTCLEVIFKLKRRLGYHLFNTYIPTCLIVIMSWVSFWIKPDAAPARVTLGVTSLLTLSTQHAKSQAQLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIILDDRGGKPKEPAEAAKARMRAVSIDRFSRVFFPLLFAVLNATYWIQFAQYI-