| DPOGS214195 | ||
|---|---|---|
| Transcript | DPOGS214195-TA | 435 bp |
| Protein | DPOGS214195-PA | 144 aa |
| Genomic position | DPSCF300014 + 134444-135389 | |
| RNAseq coverage | 1219x (Rank: top 10%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL007331 | 4e-75 | 89.58% | |
| Bombyx | BGIBMGA005922-TA | 6e-51 | 68.75% | |
| Drosophila | p16-ARC-PA | 4e-48 | 61.90% | |
| EBI UniRef50 | UniRef50_D6WJE2 | 6e-55 | 69.03% | Actin-related protein 2/3 complex subunit 5 n=2 Tax=Tribolium castaneum RepID=D6WJE2_TRICA |
| NCBI RefSeq | XP_970790.1 | 2e-56 | 71.81% | PREDICTED: similar to Arp2/3 complex subunit ARPC5 [Tribolium castaneum] |
| NCBI nr blastp | gi|91082167 | 4e-55 | 71.81% | PREDICTED: similar to Arp2/3 complex subunit ARPC5 [Tribolium castaneum] |
| NCBI nr blastx | gi|91082167 | 6e-53 | 73.29% | PREDICTED: similar to Arp2/3 complex subunit ARPC5 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0030833 | 5.6e-68 | regulation of actin filament polymerization | |
| GO:0005856 | 5.6e-68 | cytoskeleton | ||
| KEGG pathway | tca:659386 | 5e-56 | ||
| K05754 (ARPC5) | maps-> | Shigellosis | ||
| Pathogenic Escherichia coli infection | ||||
| Regulation of actin cytoskeleton | ||||
| Bacterial invasion of epithelial cells | ||||
| Fc gamma R-mediated phagocytosis | ||||
| InterPro domain | [2-144] IPR006789 | 5.6e-68 | ARP2/3 complex 16kDa subunit (p16-Arc) | |
| Orthology group | MCL13593 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS214195-TA
ATGGCTAAGAATACATCTAATTCAGCATTTCGTAAAATTGATATTGATCAATATAACGAAGACAACTTTAAAGAAGATGAATCTGATCAGTCAGTACCGACAGGGCCAGACGAGGGGGAAGTGTGTCAATACATCGAAGCTTTAAAACATGTTCTAAATAATGCACCTCTAGGTACATCGGACCAACAAATCAAGGACAATGCATTAGCCCTCACACTGAAAGTATTACTTGCTATAAAATCTGTTCAAATTGAAGAAGCTGTTGGAAGCCTGTCCCTAGATGATATAGACATCCTCATGAAATACATCTACAGGGGCTTTGAATATCCATCGGAGGGTTCAAGTGGACATCTCCTGCTATGGCATGAAAAAGCCTTCAATGTGGGGGGAGCGGGTTCTATCGTAAGAGTTCTCTCTGATAGGATGAAAGTTTAA
>DPOGS214195-PA
MAKNTSNSAFRKIDIDQYNEDNFKEDESDQSVPTGPDEGEVCQYIEALKHVLNNAPLGTSDQQIKDNALALTLKVLLAIKSVQIEEAVGSLSLDDIDILMKYIYRGFEYPSEGSSGHLLLWHEKAFNVGGAGSIVRVLSDRMKV-