Monarch geneset OGS2.0

DPOGS214289
TranscriptDPOGS214289-TA2280 bp
ProteinDPOGS214289-PA759 aa
Genomic positionDPSCF300014 + 2249477-2252486
RNAseq coverage276x (Rank: top 39%)
Annotation
HeliconiusHMEL0114274e-15055.22% 
BombyxBGIBMGA006002-TA4e-13239.44% 
Drosophilamys-PA8e-9932.86% 
EBI UniRef50UniRef50_A0S6A30.045.57%Integrin beta n=2 Tax=Noctuidae RepID=A0S6A3_SPOFR
NCBI RefSeqNP_001161755.11e-15441.19%integrin beta subunit 2 [Bombyx mori]
NCBI nr blastpgi|828806400.045.57%integrin beta 1 [Spodoptera frugiperda]
NCBI nr blastxgi|828806400.045.57%integrin beta 1 [Spodoptera frugiperda]
Group
Gene OntologyGO:00083052.9e-172integrin complex
GO:00071602.9e-172cell-matrix adhesion
GO:00071552.9e-172cell adhesion
GO:00048722.9e-172receptor activity
GO:00072292.9e-172integrin-mediated signaling pathway
GO:00054882.9e-172binding
KEGG pathwaymmu:164213e-101 
 K06590 (ITGB7)maps-> Dilated cardiomyopathy
    Regulation of actin cytoskeleton
    Cell adhesion molecules (CAMs)
    Arrhythmogenic right ventricular cardiomyopathy (ARVC)
    Hypertrophic cardiomyopathy (HCM)
    Focal adhesion
    Intestinal immune network for IgA production
    ECM-receptor interaction
InterPro domain[20-755] IPR0158122.9e-172Integrin beta subunit
[28-427] IPR0023691.1e-112Integrin beta subunit, N-terminal
[714-755] IPR0148361.9e-06Integrin beta subunit, cytoplasmic
Orthology groupMCL25191 Lepidoptera specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS214289-TA
ATGCATATTTTGTATCAAATAAGTTTAGTGTTGTGTTGTTTTACACTAATATCTTGTGAATCGAATTGCCACAATTTTGATACGTGTGGCGGGTGTATTGGATACGCATTTGATAGATGCGTTTGGTGTGCGGCTAAAAATCATTCGGAACGAAGATGTCAGTCCAAAAGTACTTTACCTGCTAACGCTACCTGGTGTGGTGAAGCTGTCTATGACCCAGAGTTTAATAAAAATGTAATATCAAACGAAAATTTTAATACTGGACAGGATGGAATGAAAACGGTTCAATTTAGACCACAGAGCATCAAAATAAAGGCTCGTCCTGGGGTACCGGTTGATTTTATGATGTCTTACAAACCTGCAACAGATTACCCATTAGACCTTTATTACCTGATGGATTATTCAAAAACAATGCAAGTACATGCCACAACATTAATGGAACAGGGTTACAAGATTTATAAGGAGCTACGCAAACTAACTAATAACGTACGTTTGGGCATAGGAAGTTTTATCGAGAAACCTGCTTTACCGTACGCTGATATTTCTGTGGCTGAGTCGTATTCTTTTAAAAACCATTTGTCGTTGACGGATAATATGACATTATTTGAAAGAGCTATAAACGAGACCCTATTCGGTAGTAATTATGATGATCCAGAGGCAGGTTTCGATGCACTAATGCAAGCAATGGTCTGCATTAAGGAAATTGGTTGGAGGGAAAATTCAAGAAGAATTATTGTACTTAGCACTGATTCAACATATCATAGTGCAGGTGACGGAAAATTTGTGGGCGCGGTCTTGAAAAATGACATGCAGTGTCATCTTGATGGGAATATTTATGGAGATATGTCTTTGAAGTTTGATTATCCATCTGTTGGTCAAATAAATAATATAGCGTCAAAAAATAACTTTAAAATTATTTTTGCGGTGGAAAAGAAAGTCATGCGCGATTATAAAGCTTTAGAGAAGAAAATTCAGGGTTCGAAGTATGTAGAATTGAAAACTGGTTCTAAAATTGTGGATATGATAAAAAAGGAATATTTGGAATTAGTTAGAACTATAACATTAGATGCTTATAATATTCCATCACTCATGGAATTAAATTATGAACCTGACTGTAGTAGCGGTGCCTGTAACGTAGAACACAATAAAACTTTGAATATTAAAGGCACGTTGACTGTCAAATCCTGTCCAGAAAACAAAGAAGTAACCCATTCTCTTATGATTGGACCTTTATCTTTAAACGAAAAGTTAAATATTGAGATTGAAATAGATTGTGAATGTGAATGTGAGAAAGTGAAAAATCGTGAAGAAAATTCAAAATTATGCAGCGAAAATGGAACCTATCAATGTGGAGTTTGTAAATGCAATGAAAATAGATCTGGCGATATTTGTCAATGTGTTGGAAATTCAGTTGATACGGGAGATCGAAATAAATGCAAAGCAAACAATGACATTTTCCCATGTAGTATGTTTGGTACTTGCAGATGCGGAAAGTGCGAATGTCCAAAAGGATTTTCTGGAGCTTACTGTGAATTTAATGATAATGCATGTCCAAGTCCTGGGGGTTTGATATGCGCAGGACACGGTAACTGCAGTTTTGGAAGGTGCATCTGTGAACCTCATTGGACTGGTGAAGGTTGTAAATGTCCCGAAAATAGGTGTATGGCACCGTACTCCCAGGAAATATGTTCAGGGAACGGGGATTGTGTATGTGGTGAATGTAAATGCAAACCTATGGCTAACAATAATATATGTTCCGGCAAATTTTGTGACGATTGCGAGGAGCTAGCCGCAAAGAGATGCAAAGAGTTAGAGGAATATGCTTATTGTAATTATAATGCAAATAAAACGATTTGTGATGAGAAATTTAACCACACGGACACTGAAGTTATATTAGTGAACAAAACAGAAATTTACTCAGCCGATTGGTACATGGCCAAGATGTGGTGCAGAAAATATCTTGATGATGGACGGATATTAGTTTTTAAGTATCATTATCCGAATTCAACTACTACGTCCTCACTTTTGCTTATCATCCAAAATGAATTGGATATGAAATCTCACGTGAATTTATGGATCGCCGGTGGGAGTGTTCTTGGGTCTGTCCTGTTGATTGGCTTGGGCACTGTTCTTATCTGGAAAGTTTTAATTGACATGTATGATAGAAGAGAATATCAGAACTTCATAAAGTCATCTACAGCCGCTGGTTACAATGTTGAGAATGTTGTGTACAATCCACCAATTGTTACTTATAGGAACCCAATGTGTGAATCCAAATAA

Protein sequence:

>DPOGS214289-PA
MHILYQISLVLCCFTLISCESNCHNFDTCGGCIGYAFDRCVWCAAKNHSERRCQSKSTLPANATWCGEAVYDPEFNKNVISNENFNTGQDGMKTVQFRPQSIKIKARPGVPVDFMMSYKPATDYPLDLYYLMDYSKTMQVHATTLMEQGYKIYKELRKLTNNVRLGIGSFIEKPALPYADISVAESYSFKNHLSLTDNMTLFERAINETLFGSNYDDPEAGFDALMQAMVCIKEIGWRENSRRIIVLSTDSTYHSAGDGKFVGAVLKNDMQCHLDGNIYGDMSLKFDYPSVGQINNIASKNNFKIIFAVEKKVMRDYKALEKKIQGSKYVELKTGSKIVDMIKKEYLELVRTITLDAYNIPSLMELNYEPDCSSGACNVEHNKTLNIKGTLTVKSCPENKEVTHSLMIGPLSLNEKLNIEIEIDCECECEKVKNREENSKLCSENGTYQCGVCKCNENRSGDICQCVGNSVDTGDRNKCKANNDIFPCSMFGTCRCGKCECPKGFSGAYCEFNDNACPSPGGLICAGHGNCSFGRCICEPHWTGEGCKCPENRCMAPYSQEICSGNGDCVCGECKCKPMANNNICSGKFCDDCEELAAKRCKELEEYAYCNYNANKTICDEKFNHTDTEVILVNKTEIYSADWYMAKMWCRKYLDDGRILVFKYHYPNSTTTSSLLLIIQNELDMKSHVNLWIAGGSVLGSVLLIGLGTVLIWKVLIDMYDRREYQNFIKSSTAAGYNVENVVYNPPIVTYRNPMCESK-