DPOGS214342 | ||
---|---|---|
Transcript | DPOGS214342-TA | 681 bp |
Protein | DPOGS214342-PA | 226 aa |
Genomic position | DPSCF300020 - 198140-209031 | |
RNAseq coverage | 23x (Rank: top 78%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL003468 | 2e-27 | 33.86% |   |
Bombyx | BGIBMGA004670-TA | 5e-42 | 65.83% |   |
Drosophila | CG3690-PA | 1e-20 | 31.74% |   |
EBI UniRef50 | UniRef50_UPI0002246A3E | 4e-22 | 33.51% | UPI0002246A3E related cluster n=2 Tax=unknown RepID=UPI0002246A3E |
NCBI RefSeq | XP_001814622.1 | 3e-25 | 36.70% | PREDICTED: similar to CG31272 CG31272-PA [Tribolium castaneum] |
NCBI nr blastp | gi|189234343 | 6e-24 | 36.70% | PREDICTED: similar to CG31272 CG31272-PA [Tribolium castaneum] |
NCBI nr blastx | gi|189234343 | 7e-25 | 36.70% | PREDICTED: similar to CG31272 CG31272-PA [Tribolium castaneum] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0055085 | 1.8e-13 | transmembrane transport | |
GO:0016021 | 1.8e-13 | integral to membrane | ||
KEGG pathway | der:Dere_GG17659 | 2e-12 |   | |
  | K06258 (SV2) | maps-> | ECM-receptor interaction | |
InterPro domain | [23-194] IPR016196 | 7.2e-22 | Major facilitator superfamily domain, general substrate transporter | |
[46-191] IPR011701 | 1.8e-13 | Major facilitator superfamily | ||
Orthology group | MCL30270 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS214342-TA
ATGAGTGATTTAAATTTACAGGTTCTGGCCGGACATGGAAATGTGGAGACAAAGGCGCCGACCGCAATGCAGGAGGTAAACCTCGCACTCAAAGCGTGTGGTTTTGGTTTATTTCACATCCAACTCATGTTTACATCCTTTGTCGGCTTTGTGGCCGGTATCATGGTGACAAATAGCACGCCTTATATATTGCCAATTGCTGAATGTGACCTCAATATGAATCTCTTGCAGAAAGGAGTGCTGAATGCGATGCCTTTTGTCGGAATGGTTTCCGTGTGTGTAGTTGCTGGTTTTTTAACTGACACCTTTGGTCGAAAAATATTTTTAGTTGGTGGATACGGGGGACTTTTTGTATTTACTTTTATAGGTGGTATAAGTCAAACGTATCTGGTATTAGTAACAGCCAAGTTGTTTGAAGGCATGTTATTTGCAGCATCTTTCAACGCAGTGGTCACCTTAACGTCGGAATTCTGTCACAATGGCATAAGGGATCGCATGATGCTATTGCAGTCATCTTTCGCAGGGTTTGGTCAAGTGATTGGGGCTTTAATGTCGTGGGCAATTTTAACACAGAAATGGAGAGATTCATATTTCAACGGAACTATTGGTAAAAATGTATTTGAAATTATATACCAGGGTCATTTAATTTTTTCACTACCACCCGTTAAGATAATGATCTGA
>DPOGS214342-PA
MSDLNLQVLAGHGNVETKAPTAMQEVNLALKACGFGLFHIQLMFTSFVGFVAGIMVTNSTPYILPIAECDLNMNLLQKGVLNAMPFVGMVSVCVVAGFLTDTFGRKIFLVGGYGGLFVFTFIGGISQTYLVLVTAKLFEGMLFAASFNAVVTLTSEFCHNGIRDRMMLLQSSFAGFGQVIGALMSWAILTQKWRDSYFNGTIGKNVFEIIYQGHLIFSLPPVKIMI-